Streptomyces prasinus: CP972_04475
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Entry
CP972_04475 CDS
T07676
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spra
Streptomyces prasinus
Pathway
spra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP972_04475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spra03021
]
CP972_04475
03019 Messenger RNA biogenesis [BR:
spra03019
]
CP972_04475
Transcription machinery [BR:
spra03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CP972_04475
Messenger RNA biogenesis [BR:
spra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CP972_04475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA_16
Spore_III_AA
AAA_28
DUF3086
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
QEV05033
UniProt:
A0ABX6ARE7
LinkDB
All DBs
Position
952381..953535
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AA seq
384 aa
AA seq
DB search
MATPTLDRPSLRQLSQPVSGVLDIDAAGRGHLRAGTFLPSPADPVVSPAVLRRYGLRKGD
LAEGLRGDRGALTEVTRINGRAPEALRDRPRFGDLTPLHPRERLRLEHPASGLAGRVVDL
LAPVGKGQRGLLVAPPKTGKTVLIQQLAAAVAGNHPECRLMVVLLDERPEEVTDMRRSVR
GEVYASTFDRPAEQHIALAELVIERARRLVEAGEDVVVLLDSLTRLCRAYNTAAARGGRT
MSGGVDVSALIGPKRFFGAARRAEEGGSLTILASALVETGSRADEFYFEELKGTGNMELR
LSREAASRRLFPAVDIVPSGTRREELLLTPAELSAAQGLRRVLQSQGRSGLETLLERMRE
TPDNAAFLRRVRPTLPGGRPVPGS
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggccacccccacactcgaccgcccctccctccggcagctgtcccagcccgtcagcggt
gtcctcgacatcgacgcggccgggagggggcacctgcgggccggcaccttcctgccctcc
cccgccgacccggtcgtctcccccgccgtgctccgcaggtacggcctgcgcaagggcgac
ctggccgagggcctgcgcggcgaccggggcgccctgaccgaggtcacccggatcaacggc
cgtgcccccgaagcgctgcgcgaccggccccgattcggggacctgacaccgcttcacccg
cgggagcggctgcgcctggagcaccccgcgtccggtctggccgggcgcgtcgtcgatctg
ctcgcccccgtcggcaaggggcagcggggcctgctcgtggccccgccgaagaccggcaag
accgtgctgatccagcagctcgcggcggccgtcgcgggcaaccaccccgagtgccgtctg
atggtggtgctgctcgacgaacgccccgaggaggtcaccgacatgcggcgctcggtgcgc
ggcgaggtgtacgcctcgaccttcgacaggcccgccgagcagcacatcgccctggccgag
ctggtgatcgagcgggccaggcggctggtcgaggcgggcgaggacgtcgtcgtcctgctc
gactcgctgacccggctctgccgggcgtacaacaccgccgccgcccgcggtggccgcacc
atgagcggcggggtcgacgtctcggcgctgatcggtccgaagcggttcttcggtgccgcg
cgccgggccgaggagggcggttcgctgacgatcctcgcctcggccctggtggagaccggc
tcccgcgccgacgagttctacttcgaggagctcaagggcaccggcaacatggagctccgg
ctgagccgtgaagcggcgtcccgccggctgttcccggccgtcgacatcgtcccgtccggc
actcgccgtgaggagctgctgctcacccccgcggagctgtcggccgcacagggtctgagg
cgggtgctgcagtcccagggccggtccggcctggagacgctgctggagcggatgcgcgag
acccccgacaacgcggccttcctccggcgcgtccggcccaccctgcccggcggccggccg
gtgcccggcagctga
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