Streptomyces prasinus: CP972_12345
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Entry
CP972_12345 CDS
T07676
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spra
Streptomyces prasinus
Pathway
spra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP972_12345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spra03019
]
CP972_12345
03009 Ribosome biogenesis [BR:
spra03009
]
CP972_12345
Enzymes [BR:
spra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP972_12345
Messenger RNA biogenesis [BR:
spra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP972_12345
Ribosome biogenesis [BR:
spra03009
]
Prokaryotic type
rRNA processing factors
CP972_12345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QEV06357
LinkDB
All DBs
Position
complement(2682975..2687192)
Genome browser
AA seq
1405 aa
AA seq
DB search
MLEPTEPTEGSEPNSPSDTLPPRRRRRAASRPAGPPAAASGTAEETTAPAIPAAGPAELL
DGNDELTAAEDTAAETAAAPEPAAADDAGPRRRRRVVRRPASSAGEPEAASAAETVVPAT
EAPAAPAAEPAESVADAAPAEEAAPPRTRRRATRRVTSPTTTVSEATGPDRSAASAESTV
TPDSPRATATASDTAAPASVEAAPADTADTAVDDDAAPRRTRRRASRRASAPATTETVQA
APSAEAAASPAEEAKAPVSETTGETPKAPAVSEAPEAPEAPAAEDAAPRRRRRAVRKAAA
GFAEPARPAAGSAGAAGTAKRPARPAVAVFQAPVFTEPQFQTPERAAAEAAAEAAGAVEP
EEPEETEELPEEQPVASRRRRRRRGAAEETEAAPAARTASGGSTLTEPASDARAEDGTDA
DADADEQAEDHADDDQDENEGPGSRRRRRRGGRRRRRGESAEADAEGGESEDDADDETED
TEDGSADDAEDTDESAEDGDDTGTAGGSSSSRRRRRRRRRAGDGGGEADASGDDPERTVV
KVREPRKAAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERV
MVVRQYGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGR
NAVLYAGEVNFEALGMANGPRRIEAALKSGQPVLTQVTKDPIGHKGARLTSQVSLPGRYL
VYVPEGSMTGISRKLPDTERARLKSILKRVVPEDAGVIVRTAAEGASEDELRRDVERLQA
QWEEIKKKSRNGGGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVAH
VAPDLAGRLQRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVIDVNTG
KFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLEC
LGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPTSTGGGG
KRRKRARAGGEHVHEHEADVVTTAEQEAEAESEPETVAEVAAETAEPIALPAPEYTPDEE
LYSSAAEAEAAASRGRGRRRTSRRASAPAGTPRREERRREPAVAASTDAPAAEEPQAQVP
TAQDTTAAQEAARPVQPEPAAEAHAVPAAAEDPVVEAPAAAEAAPAVRTRRRATRKASAP
AGSPAGAEATVVTVAETVPATAPSEPGQASEPVAEQPPAEAPESAAETAAPPRPRRRAVR
KPTVSTASEEAAVVVVPSATAEREAPVDETAAVDGTVTAAEAEAVEAAVEETAPVKKAAR
ATAKKTTAKKAATKKTTAAKTTPAKKTAAKTTAAKKTAAKKATVKKAAAKTTTAKKTVAK
KTTAKKTAAAAAQQPTPSVTVSTED
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgagcccacagagggctccgaaccgaacagccccagcgacaccctg
ccgccgcgccgccggcgccgggccgcgtcccgccccgccggaccgcccgcggcggcctcc
ggcacggcggaggagacgaccgctccggccataccggcagccgggcccgccgaactgctc
gacgggaacgacgaactcacggccgcggaggacaccgcggccgaaacggccgcggccccc
gagccggccgccgcggacgacgccggcccgcgcaggcgccgtcgcgtggtgcgccgcccg
gcctcgtccgcgggcgagccggaggcggcgagcgccgccgagaccgtcgtaccggcgaca
gaggccccggccgctccggcggccgagcccgccgagtccgtcgcggacgccgcgccggcc
gaggaagcggctccgccgcgtacgcgccgtcgtgccacgcgccgcgtgacctcgccgacg
accaccgtctccgaagccaccggaccggaccggagcgccgcgagtgccgagagcaccgtg
accccggacagcccgcgggccaccgcgaccgcctccgacaccgccgcccccgcctccgtg
gaggccgccccggcggacaccgccgacaccgccgtcgacgacgacgcggccccccgccgc
acccggcgtcgcgcctcgcgccgtgcctccgcccccgcgaccaccgagacggtgcaggct
gctccgtccgccgaggccgccgcctcccccgccgaggaggcgaaggctcccgtgagcgag
accaccggagagaccccgaaggcccctgcggtgtccgaggcgcccgaggcgcccgaggcg
cccgccgcggaggacgccgctccgcgccgccgtcgccgtgcggtccgcaaggccgccgcc
ggattcgccgagcccgcccggcccgccgcggggtcggccggagccgccgggacggcgaag
cgtcccgcgcgtcccgcggtcgccgtcttccaggctcccgtgttcaccgagccccagttc
cagaccccggagcgggccgccgccgaagcggccgccgaggccgccggcgcggtggagccc
gaggagccggaggagaccgaggagctcccggaggagcagcccgtcgcctcccgccgccgg
cgccgtcgccggggcgccgccgaggagaccgaggcggcaccggccgcccggaccgcttcc
ggcggcagcaccctcaccgagcccgcctccgacgcccgcgccgaggacgggacggacgcc
gacgcggacgccgacgagcaggccgaggaccacgcggacgacgaccaggatgagaacgag
ggccccggctcccgccgtcgccgccgccggggcggccgtcgccgcaggcgcggcgagtcc
gccgaggccgacgccgagggcggcgagtccgaggacgacgccgacgacgagaccgaggac
accgaggacggatccgccgacgacgcggaggacaccgacgagtcggccgaggacggcgac
gacacgggcaccgcgggcggctccagcagcagccggcgccgtcgtcgccggcgccgccgg
gccggggacggcggcggcgaggccgacgcctccggcgacgaccccgagcgcaccgtcgtc
aaggtccgtgagccgcgcaaggccgccgagccgtcggacgaggtgcagtccatcaagggc
tccacgcgcctggaggcgaagaagcagcgccgccgggaaggccgtgagcagggccgccga
cgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgagcgcgtc
atggtggtccggcagtacggcgaccgtacgcagatcggcgtcctggaggacggcgtgctc
gtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggcaacgtgtacctcggc
aaggtgcagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgc
aacgccgtgctctacgccggcgaggtcaacttcgaggcgctgggcatggccaacggcccg
cgccggatcgaggccgcgctgaagtccggccagccggtcctcacccaggtgacgaaggac
ccgatcgggcacaagggtgcccgtctgaccagccaggtctccctcccgggccgctacctc
gtgtacgtccccgagggctcgatgaccggcatcagccgcaagctccccgacaccgagcgg
gcccggctgaagagcatcctcaagagggtcgtccccgaggacgcgggcgtcatcgtgcgc
accgccgccgagggcgcgagcgaggacgagctgcgccgtgacgtcgagcggctgcaggcg
cagtgggaggagatcaagaagaagtccaggaacggcggcggctcgaacgcgccgacgctg
ctgtacggcgagccggacatgaccgtccgggtcgtgcgggacatcttcaacgaggacttc
tccaaggtcatcgtcagtggcgacgaggcatgggagaccatccacggctacgtcgcgcac
gtcgcgcccgacctggctggccggctgcagaggtggaccagcgaggtcgacgtcttcgcc
acgtaccggatcgacgagcagctcgccaaggcgctcgaccgcaaggtctggctgcccagc
ggtggttcgctggtgatcgaccggaccgaggcgatgatcgtcatcgacgtcaacaccggc
aagttcaccggtcagggcggcaacctcgaggagacggtcaccaggaacaacctggaggcg
gccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcatcgtcatcgac
ttcatcgacatggtcctggagtccaaccgggacctggtgctgcggcgcctgctcgagtgc
ctgggccgggaccgcacgaagcaccaggtcgccgaggtgacctcgttgggcctggtgcag
atgacccgcaagcgggtcggccagggtctgctggagtcgttctcggagacctgcgtccac
tgcaacgggcgcggcgtcatcgtccacctggaccagcccacctccaccggaggcggcggc
aagcgcaggaagcgggcgcgggccgggggcgagcacgtccacgagcacgaggccgacgtc
gtcacgacggcggagcaggaggcggaagcggagtcggagccggagacggtggccgaggtc
gccgccgagaccgccgaaccgatcgcgcttccagcccccgagtacacccccgacgaggag
ctgtacagcagcgccgccgaggcggaggccgcggcctcccgcggacgcggccgccgccgg
acgagccggagggcctcggccccggcgggcacgccgaggcgcgaggagcgccgtcgtgag
ccggccgtcgccgcgagcacggacgcgcccgccgcggaggagccgcaggcccaggtgccg
acggcccaggacacgacggccgcgcaggaggccgcgcgtccggtgcagccggagccggcc
gccgaggcgcacgccgtaccggccgccgcggaggacccggtcgtcgaggcgcccgccgcc
gcggaggccgctcccgcggtccgtacgcgtcgccgggccacccgcaaggcgtccgcgccg
gccggttccccggcgggtgccgaggccacggtggtgacggtcgcggagaccgtccccgcg
accgctccgtcggagcccgggcaggcgtccgagccggtggcggaacagcccccggccgag
gcgcccgagtcggcggccgagaccgccgcgccgccgcgtccgcgccgccgcgcggtgcgc
aagccgaccgtgtccaccgcgtccgaggaggcggccgtcgtggtcgtcccgtcggccacg
gcggagcgggaagccccggtcgacgagacggcagcggtggacgggacggtgaccgccgcc
gaggcggaggccgtcgaggcggccgtcgaggagacggctccggtcaagaaggccgcccgc
gcgacggccaagaagaccacggcgaagaaggccgccacgaagaagacgacggcggccaag
acgacgccggccaagaagaccgccgccaagacgacggcggccaagaagaccgccgccaag
aaggcgacggtcaagaaggcggccgccaagacgacgacggccaagaagaccgtcgcgaag
aagacgacggcgaagaagaccgcggcggcggcggcccagcagccgactccctcggtcacg
gtgtcgacggaggactga
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