Sinorhizobium prairiense: N0Q91_15780
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Entry
N0Q91_15780 CDS
T11548
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spre Sinorhizobium prairiense
Pathway
spre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N0Q91_15780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spre03019
]
N0Q91_15780
03009 Ribosome biogenesis [BR:
spre03009
]
N0Q91_15780
Enzymes [BR:
spre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N0Q91_15780
Messenger RNA biogenesis [BR:
spre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N0Q91_15780
Ribosome biogenesis [BR:
spre03009
]
Prokaryotic type
rRNA helicases
N0Q91_15780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WEJ14954
LinkDB
All DBs
Position
2709854..2711746
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AA seq
630 aa
AA seq
DB search
MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP
TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT
LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR
RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR
FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL
ENARITAAWAKPPSADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF
VRQFRSNRSAPEELVEVAVYDDRRKPRRDGPAFTADSDPAPRADFADGQWFSLSVGRKQN
AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRLLEKGIRVK
TLPGAPDTSRPRQDKPDFEKKRPPAAASEREHKDFKPKRKFDKQPPVAQDAHPDSRGAKP
WSKKKGKPEAQKTGDFKPGAKRNNAKKRQP
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcgcagggatcgcgccggcgatcgccgaggcgttggcaaaacgcggttac
gagacgctgacgccggttcagcaagccatgctggatccgtcgctcggcaccgccgacgcg
ctcgtctccgcccagaccggctccggcaagaccgtggccttcggcctcgcactggcgccg
acgctcatcggttcggcgaggaaattcgcgcaggccggcgcaccgcttgcacttgtcatc
gcgccgacgcgcgaattggcgctgcaggtcatgcgcgagctcgactggctttacgagatg
gcgggggccaccatcgcctcctgcgtgggcggcatggatatgcgcagtgaacggcgcacg
ctggaacgcggcgcccatatcgttgtcggcacgccggggcggctttgcgaccatatccgc
cgtggatcgctcgatatatcgggactgaaggccgtcgtactcgacgaggccgacgagatg
ctggacctcggtttccgcgaggacctggagttcattctcgaggcgtcgccggcggatcgc
cgcacgctgatgttctctgccaccgtgccgcgctcgatcgcgacgctcgccaagaattac
cagcgcgacgccgtccgcataggcgtcacctccgagcagaagcagcatggcgacatcgag
taccgctcgctgctcgtggcgccgagcgaccgtgagaatgccattatcaacgtgctgcgc
ttttacgaagcgaggaatgcgatcgtcttctgctcgacgcgcgccgcggtcaaccatctg
accgcccgcttcaacaatcgcggcttttcggtcgtggcgctctccggcgagctcagccag
aacgaacgcacccacgcactgcaggccatgcgcgacggccgcgcccgcgtgtgcatcgcg
accgacgttgcggcgcgcgggatcgaccttccgggcctcgagctcgtgatccatgccgac
ctgccgaccaactccgacacgctgctgcatcgcagcggccggaccggtcgcgccggccag
aaaggcgtgagcgcgctgatcgtgcccgtgaatgcccgccgcaaggccgagcggctgctt
gaaaacgcacggattaccgccgcctgggcaaagcccccgtcggccgacgaggtggcacgc
cgcgacgacgagcgcatcgccgccgatccagcccttgccgaagcgccgcgcgaggatgaa
caggcgatcgtcgagacgctgatcagccggtacggggcggaaaagatcgccgcggccttc
gtccggcagttccgctcgaaccgttccgctccggaggagctcgtggaggtcgccgtctac
gacgatcgcaggaaaccgcgtcgcgacggcccggctttcacggccgacagcgacccggct
ccgcgagccgacttcgccgacggccagtggttttccctctccgtcgggcgcaagcagaac
gccgagccccgttggctgatcccgatgctttgccgttacggcaagctgagcaagcgcgat
atcggcgcgatccgcatgcagcccgaggaaacctatgtcgagatgacggccgacggcgca
gaacgccttcttgccgcgatcggcccgaaccggctgctggaaaagggcattcgcgtcaaa
acccttcccggtgccccggatacctccaggccgcggcaggacaagccggacttcgagaaa
aagcgtccgccggcggccgcatcggagcgcgagcacaaggacttcaagccgaagcgcaag
ttcgacaagcagcctcccgtcgcgcaggatgcgcatccggacagccggggcgcgaagccc
tggagcaaaaagaagggcaagcccgaagcgcagaaaaccggcgacttcaagcctggtgcc
aagcgcaacaacgccaagaagcgccagccttga
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