Streptomyces profundus: K4G22_21580
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Entry
K4G22_21580 CDS
T10233
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sprf Streptomyces profundus
Pathway
sprf03018
RNA degradation
Brite
Enzymes [BR:
sprf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K4G22_21580
Messenger RNA biogenesis [BR:
sprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K4G22_21580
Ribosome biogenesis [BR:
sprf03009
]
Prokaryotic type
rRNA processing factors
K4G22_21580
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UED86462
LinkDB
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Position
4938230..4941937
Genome browser
AA seq
1235 aa
AA seq
DB search
MHDRHEPANAEGAERTDDSNTPSDTLPPRRRRRVASRPAGPPTSVAEPVTAEVTEATPPA
PEAAREAPPAPEPAEEPAPPRRRRRATRATSEPRPAESAETADEPTEPTESPEAAQAPAA
EEATPEVAELADVPEVTEVAPRRRRRAVRAAAEPDPEAPVRRRRAAKSELKAVEAEPEPV
AETPEEPAVETTDEPVETTPRRRRRASRAAAELAAPPEPAAAPEPAEERETGRRRKRPGR
AEAEQRPKAGAPQPEEELPQPPAAPAAPAVVFQAPVFQAPMFQTPQRAAEEAATRYAEAP
ESEVDDELDEADENDALTAEAPEDTAPVAVPDEDEAADDDNGRDRPARRRRRGGRRRRRG
ELAERAAEAAAGEAGPDEAAGAADERQDEEPEAEPSSDGDDQEQAEENGGGSSRRRRRRR
RRTGDAGEQPNGEDDPERTVVKVREPRRKREEGVESSDGVRSIKGSTRLEAKKQRRREGR
EQGRRRVPIITEAEFLARRESVERVMVVRQHGERTQIGVLEDNVLVEHFVNKEQSSSYVG
NVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGLGHGPRRIETALKSGQPVLV
QVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLPDTERSRLKQILKKIVPDDA
GVIVRTAAEGATEEELTRDVERLQAQWAEIQKKSKKGNAPTLLYGEPDMTVRVVRDIFNE
DFSKVIVSGDTAWETIHGYVSHVAPDLAERLQRWTSEVDVFATYRIDEQLMKALDRKVWL
PSGGSLVIDRTEAMVVIDVNTGRFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIV
MDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSEPC
VHCNGRGVIVHMEHAHAPAGGGGGGGKKGRKRGKGAAAVEAAAVEHATEQVPEPVGASEE
PEPVASVDPVEPIVPAETAQAVERDEPLDPVEPAEPAEPTAGRRQRRRATRKASAPAGPP
KVADEGVVTTVTEPEPVAEPVVEPEPVVAEEPAAKPARRRGSRKVSVPAGAPRTTSEPTV
LVVSHEQPEPAAEPEPAPAAAPEPAAPRRAARRASAPAGSPEGAEEAVITVVAAEPAEEP
AEAAEPEAPARKTAKRATTKKTVAKKAAGTAKKTTTSAPAKKAAKSAPAKKTAAKKATAK
KATAKRATTKKTEAKKATTAKKSTTGAAGSASTEE
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgcacgatcgacacgagcccgcgaacgcggaaggtgcggaacgcaccgacgacagcaac
acaccgagtgacaccctcccgccccggcggcgccgccgcgtcgcgagccgccccgcgggg
ccgccgaccagcgtggccgagccggtgaccgccgaggtcaccgaggccacgccgccggcg
cccgaagcggccagggaggcgccgccggcccccgagccggccgaggagccggcgccgccg
cgccggcgccgccgcgccacgagggcgaccagcgaacccaggccggccgagagcgccgaa
acggccgacgaacccaccgaaccgaccgaatcccccgaggcggcccaggcacccgcggct
gaggaagccacgcccgaggtcgccgagctggcggatgtgccggaggtcaccgaggtggcg
ccgcgccggcgccgccgggccgtccgcgccgccgccgagcccgaccccgaggcccccgtc
cgccgcaggcgggccgccaagagcgagctcaaggccgttgaggccgagcccgagccggtc
gccgagaccccggaggagccggccgtcgagaccacggacgagcccgtcgagaccacgccg
cgccgccggcgccgggcgtccagggcggcggccgagctcgccgccccgcccgagcccgcc
gcggcgcccgagccggccgaggagcgcgagaccggccgcaggcgcaagcggccaggccgc
gccgaggccgagcagcggccgaaggcgggcgccccgcagccggaggaggagctgccgcag
ccgccggccgccccggccgcgccggccgtggtgttccaggcgccggtgttccaggccccc
atgttccagaccccgcagcgcgccgccgaggaggcggcgacccgttacgccgaggccccc
gagtccgaggtggacgacgagctcgacgaggcggacgagaacgacgcgctgacggccgag
gcgcccgaggacaccgcgccggtcgccgtccccgacgaggacgaggccgcggacgacgac
aacggccgcgaccgccccgccaggcgccgccgcaggggcggccggcgccgccgcaggggc
gagctggccgagcgcgccgccgaggcggcggccggcgaggccggccccgacgaggcggcc
ggagcagccgacgagcggcaggacgaggagcccgaggccgagccttcgagcgacggcgac
gaccaggagcaggccgaggagaacggcggcggctcgtcccgccgtcgccgccgtcgtcgg
cgccgcaccggcgacgcgggcgagcagccgaacggcgaggacgacccggagcgcaccgtc
gtcaaggtgcgcgagccgcgccgcaagcgcgaggagggcgtcgagtcctccgacggggtg
cggtccatcaagggctcgacccgtctggaggccaagaagcagcgccgccgcgagggccgc
gagcagggccggcggcgggtgccgatcatcaccgaggccgagttcctggcccgccgcgag
tcggtcgagcgggtgatggtcgtccgccagcacggcgagcgcacccagatcggggtgctg
gaggacaacgtcctcgtcgagcacttcgtcaacaaggagcagtcctccagctacgtgggc
aacgtgtacctgggcaaggtgcagaacgtgctcccctcgatggaggccgcgttcgtcgac
atcggcaagggccgcaacgcggtgctctacgccggtgaggtcaacttcgaggcgctcggc
ctcggccacggcccccgacggatcgagacggcgctcaagtcggggcagccggtgctcgtg
caggtcaccaaggacccgatcgggcacaagggcgcgcggctgaccagccagatctcgctg
cccggccgctatctggtctatgtccccgagggctcgatgacggggatcagccgcaagctg
cccgacaccgagcgctcccggctgaagcagatcctcaagaagatcgtgcccgacgacgcc
ggcgtgatcgtgcgcacggccgccgagggcgccaccgaggaggagctgaccagggacgtc
gagcggctccaggcgcaatgggccgagatccagaagaagagcaagaagggcaacgccccg
acgctgctctacggcgagccggacatgacggtccgggtggtcagggacatcttcaacgag
gacttctccaaggtgatcgtcagcggcgacaccgcctgggagacgatccacggctatgtc
tcgcatgtcgcgcccgatctggcggagcgcttgcagcgctggacgtcggaggtggacgtc
ttcgccacctaccggatcgacgagcagctgatgaaggcgctggaccgcaaggtctggctg
cccagcggtggctcgctggtgatcgaccgcaccgaggccatggtggtcatcgacgtcaac
accggtcgcttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctg
gaggcggccgaggaaatcgtgcgtcagctgcggctgcgcgacctgggcggcatcatcgtc
atggacttcatcgacatggtgctcgaatccaaccgggatctggtgctgcggcgcctgctg
gagtgcctgggccgggaccggaccaagcaccaggtggccgaggtcacctcgctcggcctg
gtgcagatgacccgcaagcgggtcggccagggcctgctggaatcgttctccgagccgtgt
gtccactgcaacgggcgaggcgtgatcgtgcatatggagcacgcccacgcgccggccggc
ggcggcggtggcggcggcaagaaggggcgcaagcgcggcaagggcgccgccgccgtggag
gcggcggcggtcgagcacgcgacggagcaggtccccgagccggtgggcgcctcggaggag
cccgagcccgtggcctcggtcgacccggtggagccgatcgtgcccgccgagaccgcccag
gcggtggagcgggacgagccgctcgaccccgtcgagccggccgagccggcggagccgacc
gccggccggcggcagcgccgccgcgccacccgcaaggcgagcgcgccggccgggccgccg
aaggtggcggacgagggcgtggtgaccacggtcaccgagcccgagcccgtcgcggagccg
gtcgtggagccggagccggtcgtcgccgaggagccggcggccaagccggccaggcggcgc
ggcagccgcaaggtcagcgtgccggcgggcgcccccaggaccacgtccgagccgaccgtg
ctggtggtctcccacgagcagccggagccggcggccgagccggagccggcgcccgccgcg
gccccggagccggccgctccgcgccgggcggcgcgtcgggcctcggcgcccgcgggatcg
cccgagggtgccgaggaggccgtgatcacggtggtcgccgccgagccggccgaggagccg
gccgaggcagcggagcccgaggccccggccaggaagaccgccaagcgcgccaccaccaag
aagacggtggccaagaaggcggccggcacggccaagaagaccaccacgagcgccccagcc
aagaaggccgccaagagcgcccccgccaagaagacggcggcgaagaaggccacggcgaag
aaggcgaccgccaagcgcgccaccaccaagaagacggaggccaagaaggccaccacggcc
aagaagtccacgaccggggcggccggttcggcctccaccgaggagtga
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