Streptomyces pristinaespiralis: SPRI_3944
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Entry
SPRI_3944 CDS
T04073
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
spri
Streptomyces pristinaespiralis
Brite
KEGG Orthology (KO) [BR:
spri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spri03019
]
SPRI_3944
Enzymes [BR:
spri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPRI_3944
Messenger RNA biogenesis [BR:
spri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SPRI_3944
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
NACHT
ResIII
DUF6139
PhoH
AAA_16
AAA_25
NTPase_1
MetJ
SRP54
Motif
Other DBs
NCBI-ProteinID:
ALC22250
UniProt:
A0A0M4DT99
LinkDB
All DBs
Position
complement(4590835..4594785)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTSFADLQTLLAGASLRDAHRLGRRLEGARRIRKPEARQAVLDEIAAEAEKSATRAALR
ATRVPQVSYPEQLPVSQKKDTILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGM
IGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQVNQDATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSRHFGD
APIVEVSGRTYPVEVRYRPLLEEDGEESDRDQITAITDAVEELMGEGKGDILVFLSGERE
IRDTAEALNKKQYRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSQDDFDARPE
FTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGAFDPAQKDP
RKKLTEMGRKLSQLPVDPRLARMVVEADKNGCVREVMVIAAALSIQDPRERPSDKQTQAD
QQHARFKDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYSQLR
TVAKQMGIHLNDEDAPEQSVHVSLLAGLLSHVGMKDVKDAGGESGRSTGKNEYLGARGAK
FAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIEPEWIEPLAQHLLKRTYSEPHWEK
DAAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRDLFIRNALVEGDWRTHHKFFADNRR
LLTEVEELEHRARRRDILVDDETLFDFYDQRVPEHVVSGAHFDSWWKHKRREQPDLLDFE
REMLINEKAGAVTKDDYPDSWRQGRLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGF
DWQIPGLREDVVTELIRSLPKPVRRHYVPAPNYAKEFLARAVPLQEPLPVTLARELQRMV
GVPVSADDFDLSRVPDHLKITFRIVDERRKKLAEDKDLEALRLRLRPKARQALSKAAASS
SPSGESLERTGLTDWSIGTLSKVFETRRAGQPVKAFPALVDEGGSVAVRLFDTEAEQAQA
MWRGTRRLIMLNIPVNPAKFASDKLTNQQKLALSRNPHGSVQALFEDCAQAAADRLIAEH
GGPAWDEESFRKLFDKVRADLVDLTVRTIDQVQQILAAWQACERRLKATNSLVLINNVQD
VRKQLDALMPAGFVTRTGLRRLPDLMRYLVAVDRRLQQMPTGVQRDTTRMEKVHEMQDEY
AWLLEQLPQGRPVPQEVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgaccttcagaccctgctggccggggcgtcgctgcgcgacgcc
caccggctcggccgccgtctcgaaggcgcccgccgcatccgtaagcccgaggctcggcag
gccgtgctggacgagatcgccgcagaggcggagaagtccgcgacccgcgccgcgctccgg
gccacccgcgtgccccaggtctcgtacccggagcagcttccggtcagccagaagaaggac
acgatcctcgaggcgatacgggaccaccaggtcgtgatcgtcgccggtgagaccggctcc
ggcaagacgacgcagatcccgaagatctgcctggaactgggccgcggcgtgcgcggcatg
atcggccacacgcagccccgccgtatcgccgcccgcacggtcgcggagcgggtggcggaa
gagctggacaccccgctcggcgaggccgtcggctggaaggtccgcttcaccgaccaggtg
aaccaggacgccacgttcgtgaagctcatgacggacggcatcctgctcgcggagatccag
accgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcggtcc
ctcaacatcgacttcctgctgggttacctggcgcagctgctgccgaagcgtcccgatctc
aaggtcgtgatcacgtcagcgacgatcgaccccgagcgcttctcccggcacttcggtgac
gccccgatcgtcgaggtcagcggccgtacgtatcccgtggaggtccgttaccgcccgctg
ctcgaagaggacggcgaggagagcgaccgcgaccagatcaccgcgatcacggacgcggtg
gaggagctgatgggcgaggggaagggcgacatcctcgtcttcctctccggcgagcgcgag
atccgggacacggcggaggcgctcaacaagaagcagtaccgattcaccgaggtgctcccc
ctctacgcccggctctcgcacgccgaacagcaccgcgtgttccagcagcacaccggccgc
cggatcgtcctcgccaccaacgtcgcggagacgtcactgaccgtccccggcatcaagtac
gtgatcgatccggggaccgcccggatctcccgctacagccaccgtacgaaggtgcagcgg
ctgcccatcgaggcgatcagccaggccagcgccaaccagcgcaagggccgctgcggccgt
acgtcggacggcatctgcatccggctctactcgcaggacgacttcgacgcgcggcccgag
ttcacggacgccgagatcctccggacgaatctggcgtcggtcattctgcagatgacggcg
gccggactcggtgacatcgagaagttcccgttcatcgatccgccggaccaccgcaacatc
cgcgacggtgtgcagctcctccaggaactgggcgcgttcgacccggcgcagaaggacccc
cgcaagaagctgacggagatgggccgcaagctctcccagctgccggtcgacccccggctc
gcccgcatggtcgtcgaggccgacaagaacggctgtgtgcgcgaggtcatggtgatcgcg
gccgccctgtcgatccaggacccgcgcgagcgcccgtcggacaagcagacccaggccgac
cagcagcacgcccgcttcaaggacgagacgagcgacttcctcgccttcctcaacctgtgg
cgctacgtccgcgagcagcagaaggagcgcggctcctccagcttccgccggatgtgcaag
caggagtatctgaacttcctgcggatccgggagtggcaggacatctactcccagctgcgc
acggtcgccaagcagatgggcatccacctcaacgacgaagacgcgccggagcagtccgtc
cacgtgtcgctgctcgcgggtctgctctcgcacgtcggcatgaaggacgtgaaggacgcc
gggggcgagagcgggcggagcacggggaagaacgagtacctgggcgctcgcggcgccaag
ttcgcgatcttccccgggtcggcgctcttcaagaagccgccgcggttcgtgatgtccgcc
gagctggtggagacgtcccgcctgtgggcgcgggtgaacgcgcggatcgagccggagtgg
atcgaaccgctcgcccagcatttgctgaagcgtacgtacagcgaaccgcactgggagaag
gacgcggccgcggtgatggcgtacgagaaggtgacgctctacggcgtgccgatcgtcgcc
cagcggaaggtgaactacgggcggatcgaccccgaggtctcgcgggacctcttcatccgc
aacgcgctggtcgagggcgactggcgcacgcaccacaagttcttcgcggacaaccgcagg
ctgctgaccgaggtcgaggagctggaacaccgcgcccgccgccgcgacatcctcgtggac
gacgagaccctcttcgacttctacgaccagcgggtgcccgaacacgtcgtctccggcgcg
cacttcgactcctggtggaagcacaagcgccgcgagcagcccgatctgctcgacttcgag
cgcgagatgctcatcaacgagaaggcgggtgcggtcaccaaggacgactacccggactcg
tggcggcagggccggctgaagttccgggtgacctaccagttcgaaccgggcgcggacgcg
gacggcgtcaccgtgcacatcccgctccaggtgctgaaccaggtcaccgacgagggcttc
gactggcagatcccgggcctgcgcgaggacgtcgtcaccgagctgatccgttcgctgccg
aaaccggtccgccgccactacgtgcccgcgccgaactacgcgaaggagttcctggcgagg
gccgtgccgctccaggaaccgctgccggtcacgctcgcgcgggagctgcagcggatggtc
ggcgtgcccgtctcggcggacgacttcgacctctcccgtgtgcccgaccacttgaagatc
acgttccggatcgtcgacgagcgccgtaagaagctcgcggaggacaaggacctggaagcc
cttcggctccggctgaggccgaaggcccgtcaggcgctgtccaaggccgccgcctcctcc
agcccttccggcgagtccctggagcgcaccgggctcaccgactggtcgatcggcacgctc
tcgaaggtcttcgagacgcggcgcgcgggtcagccggtcaaggcgttccccgccctggtc
gacgagggcggctccgtcgccgtacggctcttcgacaccgaggcggagcaggcccaggcg
atgtggcggggaacccgtcgcctgatcatgctcaacatcccggtgaatcccgccaagttc
gcctccgacaagctgacgaaccagcagaagctcgcactgtcccgcaatccgcacggttcg
gtccaggcgctcttcgaggactgcgcccaggccgcggccgaccgtctgatcgcggagcac
ggcggaccggcgtgggacgaggaatcgttccggaagctgttcgacaaggtgcgggccgac
ctcgtcgacctcaccgtccgcacgatcgaccaggtgcagcagatcctggccgcctggcag
gcctgtgagcgccgcctgaaggccacgaacagcctggtgctcatcaacaacgtccaggac
gtgcgcaagcagctggacgccctcatgccggcgggcttcgtgacccgcacggggctgcgc
cggctgcccgacctgatgcgctacctcgtggccgtggaccgccgcctccagcagatgccc
acgggcgtccagcgcgacaccacgcgcatggagaaggtccacgagatgcaggacgagtac
gcctggctgctggagcagctgccgcagggcaggccggtgccgcaggaggtcctggacatc
cgctggatgatcgaggagctgcgggtgagctacttcgcgcacgcgctgggcaccgcgtac
ccggtgtccgacaagcggatcgtgaaggccatcgacgcggcagcgccgtga
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