Scylla paramamosain (green mud crab): 135088787
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Entry
135088787 CDS
T11531
Name
(RefSeq) collagen alpha-1(XXII) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm04512
ECM-receptor interaction
sprm04518
Integrin signaling
sprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135088787
04518 Integrin signaling
135088787
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135088787
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sprm00535
]
135088787
Proteoglycans [BR:
sprm00535
]
Extracellular matrix (ECM) proteoglycans
Others
135088787
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135088787
NCBI-ProteinID:
XP_063839892
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All DBs
Position
31:complement(18631492..18661145)
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AA seq
927 aa
AA seq
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MQTAYRLKADANLQIATRDIFPQGLPQEFSMICTYRARRQPRNSWDIIRINDLRERPQFA
VTLNPIRKQVELSILSYVGSLQTLRFEDALEAFNDKWHKLHFGVFRDRVALYLDCERTSE
LPIDPIGPIDVNGNIYIAKQQESQRTVPRRRNRPNIELQWMVMSCDPSSPERETCDELPQ
LKREIDSEQVGPEQCEVVCPRGPPGLNGTTGRRGRRGLPGPQGPAGDAGLPGIPGSEGQR
GPPGEPGPVGPRGPPGSQGEQGFQGIGGPPGPPGPTGLTGAVGPIGPKGNNGERGLPGPI
GTPGPRGDPGPKGVPGDAVFVSGPSGGQGPQGPPGLQGLDGLDGAPGVPGSKGDKGDKGD
RGNNGRRGQRGEKGDTGALGQPGPRGFPGESGPPGLPGRPGGEANGETVPGPPGPPGPYG
PVGPPGEPGTIGPVGSPGPEGLPGPPGDKGERGNEGIPGNDGSKGEPGRPGIPGEKGEKG
GGGLPGVPGLIGKPGVVGLPGPEGPMGPPGLQGIKGDAGARGEPGLSGEPSPPGQPGPQG
PQGTQGNRGEEGPPGPPGLPGPAGAPGNPGQLGLIGPKGHPGLPGKKGEPGKDGEQGEGG
PVGPPGSRGLTGPPGPSGLRGRDGTSGKPGQQGPIGPRGLPGPQGPSGPLGPAGPPGLPG
FVGKPGPPGPPGPPGLPGDSSAQMMEVVGERAYGVPGVAGPMGERGMPGERGADGERGPP
GKTGHPGMPGPSGPPGLPGPTGQRGAQGNDGLPGRPGREYTEEQLRGICASVLRDNMAEI
AQTLRGPRGLPGQGRRGPPGEPGDVGPQGVPGNPGEVGPRGYPGFPGPPGPQGPAGERGQ
RGYKGERGQMGEGRDGKMGPPGDPGPAGPPGTGLPGRIGERGPPGLTGPQGGRGAPGAQG
PPGHCEYCNPALAYQSSVAAQGNTKGP
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccgcctaccgactcaaggctgacgctaaccttcagatcgccacgagggacatc
ttcccccaagggctgccacaggaattctcaatgatctgtacttaccgcgcccgccggcaa
ccccgcaactcgtgggacatcatcaggatcaacgacctcagagaaagacctcaatttgca
gtcaccctgaatcccatcaggaaacaagtggagctctctatcttgtcctatgtgggctcc
ctacagacgctcagatttgaagatgccctggaagccttcaatgacaaatggcacaaactc
cactttggcgtcttcagggatcgtgttgccctctaccttgactgtgagaggacctcagag
ctccccattgaccccattggtcctatagatgtcaatgggaatatctacattgccaaacaa
caagaatcacaacggacagttccaaggagaaggaacagacccaatatcgagctgcagtgg
atggtgatgagctgtgacccatccagcccagagcgtgagacgtgtgatgaactgcctcag
ctgaagcgggagattgactcagaacaggttggaccagaacagtgtgaggtggtgtgtccc
cgtggtcctccaggcttgaatggcactactggtcgcagggggaggagaggtctccctggt
ccacaaggacccgccggagatgcaggtctgccaggcatccctggtagtgaagggcagcgt
ggtcccccaggagagccaggacctgtggggccacgtggaccaccgggcagccaaggggaa
caaggatttcagggtataggaggccctcctggccctccaggtcctactggactcacagga
gcggtgggacctattggcccaaagggaaacaatggagagcggggtcttcctggtcccata
ggtacccctggtccacgaggtgatcctggacccaagggtgtgcccggtgatgctgtgttt
gtctctggtccttcagggggacagggacctcaaggaccaccaggcctccagggtctagat
gggttagatggggcaccaggagtgccaggcagcaaaggagacaaaggagacaaaggtgac
cgagggaacaatgggcggcgaggccagcggggtgagaagggcgacacaggagcattgggc
cagcctgggccacgtggttttcctggcgagtctggaccacctggtctgcctggaaggcct
ggcggagaggcaaatggagaaactgttcctgggccaccagggccacctggtccatatggt
ccagttggtccccctggtgaaccaggcaccatagggcctgttggctcccctggtccagaa
gggcttccaggaccaccaggggacaaaggtgagcgagggaatgaaggcatcccaggcaat
gacggatccaaaggggagcctgggcggccaggaatccctggtgagaagggagagaagggc
ggaggtggcctcccaggtgttccaggcctcattggcaagcctggtgttgttggactgcca
ggaccagagggccccatgggtcctccagggcttcagggcatcaagggcgatgctggtgca
cgtggagagccaggtctgtctggggagccatccccaccaggccagcctggaccacaggga
ccccagggaacacagggcaataggggagaggagggtccaccaggaccacctgggcttcct
ggccctgctggtgccccaggaaatcctgggcagttgggtctcattggacccaagggacac
cctggattgccgggtaaaaagggagaaccagggaaggatggagagcaaggagagggaggt
cctgtgggaccaccgggctccagaggacttacaggacctccaggtccaagtggacttcga
ggccgtgatgggacaagtggcaagccaggacagcaaggacccattggtccccgagggctt
ccagggcctcagggaccatcaggcccattaggaccagctggacccccaggccttcctggc
tttgtgggcaaaccaggccccccaggtcctcctggacccccaggacttcctggtgactca
tcagcacagatgatggaggttgtgggtgagcgtgcatatggagtgccaggtgtggcagga
ccaatgggagagaggggaatgcctggtgagcggggagctgatggtgagcgaggtcctcca
gggaagacaggccatcctggtatgccaggtccatcgggtcccccagggttgccagggccg
acaggccagcgcggggcacaggggaatgatggcttgccaggcagacctggtcgggagtac
acagaggagcagctccgggggatctgtgcctctgtgctgcgagacaatatggctgagatt
gcccaaaccctccgtggtcctcgaggattgccagggcagggacggcgaggtcctccaggc
gaacctggagatgttggtccacaaggtgtcccaggaaatccaggagaggtgggtccccga
ggttacccaggcttcccaggaccgcctggaccacagggaccagcaggggagcgaggacag
agagggtacaagggcgagcgtggtcagatgggagagggcagagatggcaagatggggcca
ccaggagatccaggacctgcaggaccgccaggcacaggtcttccagggaggataggcgag
cgtggaccacctggcttgacgggtccccagggtgggcgtggagctcctggtgcacaaggt
cccccagggcactgcgagtactgcaatccagcacttgcctaccagtcctccgtggctgcc
caaggcaacaccaagggcccgtga
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