Scylla paramamosain (green mud crab): 135089714
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Entry
135089714 CDS
T11531
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03013
Nucleocytoplasmic transport
sprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135089714
03015 mRNA surveillance pathway
135089714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135089714
Enzymes [BR:
sprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135089714
5.6.2.5 RNA 5'-3' helicase
135089714
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135089714
mRNA cycle factors
Common to processing body (P body) and stress granule
135089714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
ATPase
NPHP3_N
AAA_22
nSTAND3
AAA_16
SRP54
nSTAND_NTPase5
AAA_32
AAA_7
PhoH
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
135089714
NCBI-ProteinID:
XP_063841743
LinkDB
All DBs
Position
33:12650727..12664434
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AA seq
1121 aa
AA seq
DB search
MSVDAYGPSSQSLTFYDTEEPDLLGADTQGSEYEFNLTLGSQTQTQGDPLDKTQPSHSQV
TVNGDVEAEVEKVTETLGELQFEEEEDENAFYTKELPEWACRYCGIHDPASAVMCNVCHK
WFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFVLGFIPAKAE
SVVVLLCRQPCAAQSSLRDMNWDPEQWKPLINDRALLPWLVRVPSEAEQLRARQITAQQI
NKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLEADYDKKLKE
SQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKPWSGVGHVIK
IPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVDDSSVSPYIY
HRLLGHVEIDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVKQTGGSVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNLEDNGELQKLQQLKEETGELSSADEKRYRMLKKQAEKTLLEAADVICCTCVGA
GDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVMCKKASRAGL
SQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVADADRTMKGVSFPWP
QADKPQFFYVTSGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIGVITPYEGQR
AYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLSDPRRLN
VALTRARYGIIIVGNPKVLSKQGLWNHLLHHFKEKKVLVEGPLNNLKESMMQFSKPKRLV
NAANPGSHFMTTAMYDAREAMVPGSMYDRSGPINGATPQPSPYFRGPPYDMYGRAHDTLD
YISTEHSQPGLSNLPVPVGMFMNMAHVPPRFYQQHQQALAARGGRVGGVGMRGNRAGSRK
QTKNMGGAGAPQLSQPFSQDPSMQSYSQPGLTQGHLSQGMSGPGLSGLSQGLSQAELSQD
SYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtacggtcccagttcccagagtctgaccttctatgacaccgaagag
cctgaccttctgggggctgacacgcaggggtctgagtatgagttcaacttgaccctcggc
agccagacccagacccagggtgatccactggacaagactcagccctcccacagccaggtt
actgtcaatggagatgtagaagcagaggtggagaaagtgacagaaaccctaggagaactg
cagtttgaggaggaggaagatgaaaatgccttctataccaaggagctccctgagtgggcc
tgccggtactgtggcatccatgacccagcctcagccgtaatgtgcaatgtgtgccacaag
tggttctgcaatggccgcggcaacacctctggctctcacatcatcaaccacttggtgcgc
gccaaacataaggaggtgagcctgcacaaggatggcctggtgcgggacactgtgctggag
tgctatgcttgtgctgtcaagaatgtctttgtgctgggcttcattcctgccaaggctgag
tctgtggtggtactactgtgccgccagccctgtgctgcccagagctctcttagggacatg
aattgggatcctgagcagtggaagcccctgatcaacgaccgtgcactgctgccttggctg
gtgcgtgtcccctctgaggctgagcagttgcgtgcccgccagataacagcacagcagatc
aacaagctggaagaattgtggaaggagaatgcctcagccacctttgatgacctggagagg
ccaggggtggatgaggagccccagcaagtgtgtctcaggtacgaggatggtttccaatac
cagaacatctttggtccattggtgaagttggaagcagattatgacaaaaagctgaaggaa
tcccagacccaagacaagattgaagtgcgctgggacattggcctcaacaagaagatctgt
gcttacttcactcttgccaaaactgatggagacatgcggctgatgcatggggatgagcta
cggctgaggtacctgggagacctgcataagccctggtctggggtggggcatgtcatcaag
atcccagacaactttggggaggaggtgggcatagagctgaaatccaatgttggagtgccc
acagactgccgggacaagttcgtggttgactttgtgtggaagtcaactagctttgatagg
atgcaggctgccctacgcaagtttgctgttgatgactcctctgtatcaccctacatatac
catcgtttgctgggtcatgtggagatcgatgaacttatcttccgccatattcaccttccc
aagcagctgtctgctcctaatctgccaaccctcaataactcccagcaatatgccctgaaa
catgccttgcagcgacctctgtctctcatccaaggccccccaggcacaggcaagacagtg
acctcagccaccattgtgtaccagctggtgaagcagacaggtggctccgtgttggtgtgt
gctccttcaaatactgcagtcgatcagctcactgagaagatacacaagactggcctgaag
gtggtgcggctgtgtgccaagtcccgtgaagccattgactctcccgtgtccttccttgcc
ctccataaccagatccgtaatctagaggataatggtgagcttcagaagttgcaacagcta
aaggaggaaactggtgagctgtcatctgctgatgagaaacgttatcgcatgctcaagaaa
caggctgaaaagaccttgctggaggctgctgatgtcatctgctgcacatgtgtgggtgct
ggagatcccaggttggctcgtcttaaattccactccatcctaattgatgaatccatgcag
gccaccgaacctgagtgcatggtgccagtcgtattgggagccaagcaggtcattctggta
ggggaccactgccagctggggccagtggtgatgtgcaagaaggcttctcgtgcagggctc
tcacagtccctgtttgagcgtctggtggttctgggcattcgacctttccgtcttactgtc
cagtatcgtatgcatccacagctagcacagttcccttcaaacttcttttatgaaggttcc
ctacagaatggtgtggctgatgctgatcgcaccatgaagggtgtaagtttcccctggccc
caagcagacaagccacagttcttctatgtcacatctggtcaagaggagattgctggttca
ggaacctcctacctgaatcgcactgaagcttccagtgtggagaagctggttactcgcttc
cttaattccggggtgaaaccagagcagattggagttatcaccccatatgagggccagaga
gcttacttggtccagtacatgcaataccagggacctctcaaccagaagctgtaccaacgc
ctggaggtagccagtgtggatgcattccagggccgtgagaaagatctcatcattatgtct
tgtgtgcgatcaaatgaacaccagggcattggcttcctctctgaccctcgtcgtctcaat
gtggcactgacccgagctcgttatggtatcatcattgttggcaatcctaaagtgctctcc
aagcaaggactatggaaccatttgctccatcacttcaaggagaagaaggtgttggtggaa
ggacccctcaacaaccttaaggagtctatgatgcagttcagcaagcccaagcgtttggtt
aatgctgccaatccaggctctcacttcatgaccactgctatgtatgacgcccgtgaggcc
atggtacccggctctatgtatgatcgctctggtcccattaatggtgccacaccacaaccc
tcaccctacttcagaggtccaccctatgacatgtacggccgtgcccatgacaccctggat
tacatctctactgagcactctcaacctggcctcagcaacttaccagtcccagtggggatg
ttcatgaatatggcccatgtgccacctcgcttctatcaacagcatcagcaggctctagca
gcccggggtggccgtgtgggaggagttggaatgcgtggtaacagggccggctcaaggaaa
cagaccaagaacatgggtggggcaggtgctcctcagctctcccagcctttcagtcaggat
ccctccatgcagagttactcacagccaggactcacccagggtcacctctcacagggcatg
tctggtcctggcctaagtggactgtctcaaggattgtctcaggctgagctatcccaggac
tcctacatggtggatcagttccagagtcagaccgatggccttctctctcaagactccact
taccagggcgatcgtgcgttcttcaccccagcatcacaaacgcaccacttctcacagcca
tactga
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