Scylla paramamosain (green mud crab): 135090152
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Entry
135090152 CDS
T11531
Name
(RefSeq) cleavage stimulation factor subunit 3-like isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135090152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135090152
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135090152
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
135090152
NCBI-ProteinID:
XP_063842619
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Position
34:complement(10469245..10496189)
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AA seq
735 aa
AA seq
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MRADWGEEAWLAPLPLFASRVLSSPRRHHNMEDSPEFGTEKLRRAWSTTEANPYDMEAWS
LIIRDAQNRSIESARGIFERLVTTFPTAGKFWKMYIEQEMRSYNFEKVEKLFQRCLTKVL
NIDLWRLYVTYVKETKSSLPTYREKLSQAYEFAIDKIGMDYNSYTLWNDYANLLKNAEVV
GSYAENQKIMAVRKVFQRGIVTPMANIEQLWRDYLEFEKNINPIIAEKMNIERGRDYMNA
RRVGKELEAETRGLNRHLPSVPPSGLPEEIKQVEIWKRYIRWEKDNPLRTDDQTLVTKRV
RFAYEQCLLCLSHHPDIWYEAALFLQESSKLLSEKGDVNASKIFSEEAAQIYERAISGPL
RKNQLLYFAYADFEESRLRYPEVHKIYQRYIEMEDIDPTLAYLQYMKFARRAEGIKSTRE
VFKKAREDVRTQFHVYVGAALMEYYCTKNKDIAFRIFELGLKKFPDNADYIMAYVDYLSH
LNEDNNTRVLFERVLTSGQLKNEDTVGLWNRFLEFECNVGDLASIVKVEKRRAHVLQKLQ
EFEGKDTAQLVDRYKFMDLYPCTPAELKAIGYRDISTHAMIINPNIPRGLSIHDSQEPSY
VRPDFSQMIPFKPKAKYIPGEHPVKGGAFPPPPAVANLLSLLPPPNCFRGPFVKLEALVD
LFMRLNLPEQGGQWSTSGSHDVRLFELSKSVHWVVDPSGDRKRKLIAGDDSDDEDGNKPI
LTSDIYRARQQRKMR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagggccgattggggcgaggaggcgtggttggcacccctgccgctcttcgcctcccgc
gtcctgtcttctccgcgccgccaccacaacatggaggattcaccggaatttggaacagag
aaactccgtcgagcatggagcacaacggaggccaacccgtacgacatggaggcgtggagt
ctcatcatccgtgatgctcagaaccgctccattgaatctgcacgtggcatctttgaacgt
ctcgtcaccaccttcccaacggctggcaagttctggaagatgtacattgaacaagagatg
aggtcttataattttgagaaagttgaaaagttgttccagcgatgtctgaccaaggtgctc
aacatcgacctgtggcgcctgtacgtcacctacgtcaaggagaccaagtccagtctgccc
acttacagggagaagttgtctcaggcatatgagttcgccattgacaagataggtatggac
tacaactcctacacgctgtggaatgactacgccaacctgctcaagaacgccgaggtggtg
ggctcctacgccgagaaccagaagatcatggctgtcaggaaggtgttccagcgcggcatc
gttactccgatggccaacattgagcagctgtggcgggactacctcgaatttgagaagaac
atcaacccaatcatcgccgagaagatgaacatcgagagggggcgggactacatgaacgcc
cggcgggtgggcaaggagctggaggcggagacgcggggcttgaaccgccaccttcccagc
gtgccgccctcgggtctgcctgaggagatcaaacaggttgagatatggaagaggtacatc
agatgggagaaagacaaccctctacgcacagatgaccagactctggtgaccaagagggtg
cggtttgcctatgagcagtgccttctgtgtctctcccaccacccggacatctggtacgag
gcagcactcttcctgcaggagtcctcaaagctcctctctgagaaaggtgatgtcaatgca
agcaagatcttcagtgaggaggcagcacagatctatgagagggcaatctctggaccctta
aggaagaaccagcttctgtactttgcctatgctgactttgaggagtcccgcctgcgctac
cctgaggtgcacaagatataccaaagatacatagagatggaggacattgatccaacactt
gcttacctgcaatacatgaaatttgcgcgccgagctgagggaatcaagtccacgagagaa
gtgttcaagaaggcgcgagaggatgtgaggacacaattccatgtgtatgttggtgctgcc
ctcatggagtactactgcaccaagaacaaggacatcgcattcaggatattcgagcttggt
ctgaagaagttcccagacaatgcagactatatcatggcatatgtggactacctctcccat
ctcaatgaggacaacaacacaagggttctgtttgagcgagtgctgacatctggccagctc
aagaatgaagacactgttggcttgtggaaccgcttcttggagtttgagtgcaacgttggg
gatttggcatccattgtgaaggtggagaagaggagagcacacgtcctgcagaagctgcaa
gagtttgagggtaaagacacagcacaacttgttgaccgatacaagttcatggatctctac
ccatgtactccagctgagctcaaagccattggttaccgggacatctcaacacatgccatg
ataatcaatccaaacattccccgtggcctgtccattcatgactcacaggagccttcctac
gtgcgaccagacttctcacagatgattcctttcaagcccaaggcgaagtacatacctgga
gaacacccagtgaaaggtggagcattcccgcctcctccagccgtggcaaacctcctctcc
ctgctgccaccaccaaactgcttccggggaccctttgtcaagctggaggctctggttgat
ctctttatgcggctcaaccttcctgaacagggaggacaatggtcaaccagcggcagtcat
gacgtgcgcctctttgaactctccaagtcggtgcactgggtggtggacccaagtggtgac
cgtaaaaggaaactgattgccggtgatgactcagatgacgaagatggaaacaaacccatc
ctgaccagcgacatttaccgagccaggcagcagaggaagatgagatga
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