Scylla paramamosain (green mud crab): 135090898
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Entry
135090898 CDS
T11531
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03018
RNA degradation
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135090898
09123 Folding, sorting and degradation
03018 RNA degradation
135090898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135090898
03041 Spliceosome [BR:
sprm03041
]
135090898
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135090898
mRNA degradation factors
5'-3' decay
Lsm complex
135090898
Spliceosome [BR:
sprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135090898
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LSM14
SM-ATX
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
135090898
NCBI-ProteinID:
XP_063844138
LinkDB
All DBs
Position
36:8239135..8241950
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AA seq
101 aa
AA seq
DB search
MTARARIAKVHTPAMAAPNPSTLLPLELVDKCIGSRIHIIMKSDKEIVGTLLGFDDFVNM
VLEDVTEYESTPEGRRITQLDQILLNGNHITMLVPGGEVLD
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgcgggccaggattgcaaaggtgcacaccccagccatggccgcgccgaacccc
tcgaccctcctgccgctggagctggtggacaaatgcatcggctcccgcatccatatcatc
atgaagagtgacaaggagatcgttgggaccttgcttggctttgacgacttcgtaaacatg
gtcctggaagacgtgacagagtacgaatccacacccgaaggaaggaggatcacgcagctc
gaccagattctgctcaacgggaaccacataacaatgcttgttcctggtggtgaagtactg
gactaa
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