KEGG   Scylla paramamosain (green mud crab): 135091676
Entry
135091676         CDS       T11531                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sprm  Scylla paramamosain (green mud crab)
Pathway
sprm03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sprm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    135091676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sprm03021]
    135091676
   03036 Chromosome and associated proteins [BR:sprm03036]
    135091676
Transcription machinery [BR:sprm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     135091676
   Coactivators
    SAGA/TFTC/STAGA complex
     135091676
Chromosome and associated proteins [BR:sprm03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     135091676
    STAGA complex
     135091676
    TFTC complex
     135091676
    SAGA complex
     135091676
    SLIK complex
     135091676
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd EIF3I TFIID_NTD2 WDR55 NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C DSE1_N Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_WDR41 CFAP251_N Beta-prop_Vps41 ASA1 Beta-prop_SCAP WD40_RFWD3 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_Nup120_160 PEP5_VPS11_N PAC11 Beta-prop_IP5PC_F Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N WD_LRWD1 PROPPIN TRM82_WD Beta-prop_ACSF4 Beta-prop_EIPR1
Other DBs
NCBI-GeneID: 135091676
NCBI-ProteinID: XP_063845585
LinkDB
Position
38:7507004..7515040
AA seq 653 aa
MKKLRTDKIMATVNEYLKKRNLESGANDLNETPLQTPAPGGTASECHAGVVGLVSPSTPN
SFTFSTTSTHHSQIDLQYVRLKSWMMDASEPCRSELSQVLFPLFIHLYLELVAGTGRQTA
RKFFGKHYQVFLVNRDYESILSQVLTAANVSSSVDMSNSPIIQNLKSGKYLVRLSEVTLN
YFLRYLKATENPTLLQIFNTYIEVEVDDSGAGSSGAVFRTPDSHSGASNGLVNGHTPESM
TSETLAASADGMDCTQEELQKVKDAIARLKSAQPVPPSLCVYSVSNAYNGLSCACVNSDG
SLLSCGFEDSVVKLWKLTAPVHNVGFRQKTFTVGPRGGVSHTLLACDASRIEDDGDGADE
EEEAVAEARNGARRRNRGGELFALRGHQGPVMDTCFTHDSSHLLSVSEDTTMRLWNLESG
QAVALYRGHTYPVWCVTASPLTMHVATGSYDTTARIWATDYTYPLRTLAGHTQSVDCLAF
HSNGTYLATGSCDRTVRLWHVMDGDVARVLVHHKAPVSALAFSPNGKYLASGSEDGAVLV
WDLAGGRVLADLVGTDGSTGSTETSEHLDPIASLCWSADSALLVSASTDGCVRSSHFRQT
TTSDGSSGWELSEVRQVVCGAGTNGGVGGGQLLHTSLTCHNYLTAVTALDVER
NT seq 1962 nt   +upstreamnt  +downstreamnt
atgaagaagctcaggacggataaaataatggccactgtcaatgaatacctcaagaaaaga
aatctagagagtggtgctaatgatctcaatgagaccccattgcagactccagcgccaggg
gggacagccagcgagtgccatgctggggtggtggggctggtgtccccttccacacccaac
agcttcaccttctccaccacctccactcaccactcacagattgacctccagtatgtgaga
ctcaagtcctggatgatggatgccagtgagccatgccgatctgaactgtctcaagtgttg
ttcccactgttcatccacctctacctggagctggtggccggcacgggacgacagacagcc
agaaagttttttggcaaacactaccaggtgttcttggtcaaccgggactatgagagcatc
ctatcacaggtgctcactgctgccaatgttagttcatctgtggacatgtcaaattctcca
atcattcagaatctcaaaagtggcaagtacctggtgcggctcagtgaggtcacactcaac
tacttcctacggtacctgaaggccacggagaacccaacactgctgcagatcttcaacact
tacattgaggttgaggttgatgactctggagcaggcagctctggcgctgtgttccgcact
ccagatagccactcaggggcatccaatggcctggtcaatggccacactccagaatccatg
acgtcagagacgctggcggcttcggctgatggcatggactgcactcaggaggagctgcag
aaggtgaaggatgcaatcgcccgccttaagtctgcccagcctgtgccgccatcgctgtgt
gtgtattccgtgtctaacgcttacaatggcctcagttgtgcttgtgtcaactctgatgga
agtcttttgtcctgtggctttgaggacagtgttgtgaaattgtggaaattgactgctcca
gtgcataatgtagggtttaggcaaaagacttttacggtggggccccggggcggcgtctcc
cacaccctgctggcttgtgacgcctcccggatcgaggatgacggggacggggctgatgag
gaggaagaggccgtggctgaggcaaggaatggtgcccggagaaggaaccgtggtggggaa
ctgtttgccctgcggggccaccaggggccggtgatggacacgtgcttcacccatgattcc
tcacacctgctgtccgtcagcgaggacaccaccatgcggctctggaacctggagagtggc
caggccgtggcgctgtaccgcggccacacctaccccgtgtggtgtgtgaccgcctcgcca
ctcaccatgcatgtggccaccggctcatatgataccactgccaggatatgggccacggac
tacacctacccgctgcggaccttggccggccacacccagtctgtggactgcttggccttc
cactccaacggaacctacctggccaccggctcctgcgaccgcacagtgcgcctgtggcat
gtcatggatggcgacgtagcacgtgtccttgtccaccacaaggctcccgtcagtgctctc
gccttctctcctaatggaaagtacctcgcatcaggcagtgaggatggggcagtgttggtg
tgggacttggcggggggccgggtgctggctgaccttgtagggacggacggcagcaccggc
agtacggagacctcggagcacctggaccccattgccagcctgtgctggtctgctgactca
gcactcctggtctcggcctctacagatggttgtgttcggtctagccacttcaggcagacc
acaacaagcgacggcagcagtgggtgggagctgagtgaggtgcggcaggtggtgtgtggt
gccggtacaaatggaggtgtggggggcggacagttgctgcacacctccctcacctgtcac
aattacctcacagccgtcactgccctggatgtagagagataa

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