Scylla paramamosain (green mud crab): 135091847
Help
Entry
135091847 CDS
T11531
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03040
Spliceosome
sprm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135091847
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135091847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sprm03041
]
135091847
04121 Ubiquitin system [BR:
sprm04121
]
135091847
03400 DNA repair and recombination proteins [BR:
sprm03400
]
135091847
Enzymes [BR:
sprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135091847
Spliceosome [BR:
sprm03041
]
Complex B
Other components
Prp19 complex
135091847
Complex C
Prp19-CDC5 complex
135091847
Ubiquitin system [BR:
sprm04121
]
Ubiquitin ligases (E3)
U-box type E3
135091847
DNA repair and recombination proteins [BR:
sprm03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
135091847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_Vps41
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR41
PEP5_VPS11_N
Beta-prop_SPT8
U-box
Beta-prop_DCAF4
eIF2A
Beta-prop_VPS8
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Tricorn_2nd
Beta-prop_ACSF4
Cytochrom_D1
ATG16
DUF7099
Motif
Other DBs
NCBI-GeneID:
135091847
NCBI-ProteinID:
XP_063845928
LinkDB
All DBs
Position
38:13977426..13985070
Genome browser
AA seq
505 aa
AA seq
DB search
MALVCAICNEVPDQPVVSPLSGAVFERRLLEKYIAENGTDPITNKELTLDQLIDLKVPAV
AKPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAATRVIARL
NKEVTAAREALATLKPQAGIAPAAPAGPTIAATAEAGGAADVPSEGAGLTEEVVARLQDT
ATILTQERKRRGRTVPEGLTPAEQIRGFTTLASHPGLHSASVPGILALDVHQKDTSKIVT
GGSDKNATVFNKDTEQVVAILKGHTKKVSCVVYHPTEDTVITASPDTQIRVWNVGTSQTL
QLIRAHDGPVTGLSLHATGDYLLSASRDHNWAFSDIRTGRVLCKVSDTSASSPLTAAQFH
PDGLILGTGTQDATIKIWDLKERSNVANFPGHSGAISSIAFSENGYYLATAAEDSTVRLW
DLRKLKNFRTIQLDEGYEVMDLSFDQSGTYLAVAGTDVRVYLCKQWNDLRVFNDHTAMAT
GVRFGSNASYLASTSMDRTLKIYGP
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggctctagtttgtgcaatctgcaatgaggtgccagaccagccggtggtgtcgcctctc
tccggcgccgtgtttgagcgccggttattggagaaatacatcgctgagaatggcaccgac
ccgataaccaacaaggaactcacacttgaccagcttattgacctcaaggtgcctgccgtg
gccaagcccaagccgccaagtgccaccagcatcccggccatcctcaaggcactgcaggat
gagtgggacgccgtcatgctgcactccttcaccctccgccagcagctgcagaccgcccgc
caagagttaagccacgcactgtaccagcacgatgcagccacacgtgtcatcgcccgtctc
aacaaggaggtgacagccgcccgagaggccctggccacactcaagccccaggccggcatt
gctccagccgccccagcaggaccaaccattgcggcaacagcagaggcaggtggagcagca
gatgtgcccagtgagggagcagggctgacagaggaggtggtggcccgcctgcaggacaca
gccaccatcctcacacaggagcgtaagaggcgtggccgcaccgttcctgagggactaacc
ccggcagagcagatcagaggcttcaccaccctggcctctcatccgggcttgcacagtgca
tcagtgcctggcatcctggcccttgacgtgcaccagaaggacaccagcaagattgtgacc
ggcggcagtgacaagaatgccacagtcttcaacaaggacacagagcaggttgttgccatc
ctgaagggccacaccaagaaagtgtcctgtgttgtgtaccatcccactgaggacactgtc
atcactgcttccccagacacacagattcgtgtgtggaacgttggaacttcccagactctg
caactgattcgtgctcatgatggcccagtcaccggcctgtccctgcacgccacaggggac
tacctgctgtctgcctcccgtgaccacaactgggccttctcggacatcaggactggacgg
gtgctatgcaaggttagtgacacgtcggccagctcccccctcacagctgcacagttccac
cctgacggtcttattctgggcactggcacacaggatgccaccatcaagatctgggacctc
aaggaacgctcaaatgtcgccaacttcccgggccacagtggtgccatcagctcaatcgcc
ttcagtgagaatggatactacctggccactgctgctgaggactccaccgtgaggctttgg
gatctgcgcaaactcaagaacttcaggaccattcagctggacgagggatatgaagtaatg
gacttgagctttgaccagtctggcacatatctggctgtcgctggcacggatgtgagagtg
tacctgtgcaagcagtggaatgaccttagggtgttcaatgaccacaccgccatggccaca
ggtgtccggtttggctccaacgcttcctaccttgcctccacatccatggaccgaaccctc
aagatatatgggccttag
DBGET
integrated database retrieval system
