Scylla paramamosain (green mud crab): 135092238
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Entry
135092238 CDS
T11531
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135092238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprm03021
]
135092238
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135092238
Transcription machinery [BR:
sprm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135092238
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135092238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_3
zf-CCCH_RBM22
zf-CCCH_4
zf-CCCH_12
zf-C2H2_10
zf-CCCH_DUS3L
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
135092238
NCBI-ProteinID:
XP_063846676
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All DBs
Position
39:13414860..13421257
Genome browser
AA seq
273 aa
AA seq
DB search
MEIIVANVDKVTFDIEVQLEEQVGAQMLPFPGMDKSIAAVCTFYMRGNCSKSVNCPFRHV
RGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYSRFNACHNKECPFLHINPDMK
MKDCPWYDRGFCRHGPQCRNRHVRRVLCMSYFAGFCPDGPSCKFMHPRFELPQVMDDKQT
SHKKQGITCHYCGETGHKASQCFKANPELREQNAIISLASGGPKNQPGKEASSQNSYDTG
NRLDNITCFKCGEQGHFANRCTKGQFAFLSSGN
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggagatcatagtagccaacgtggacaaggtgacgtttgacatagaggtgcagctggag
gagcaagtgggcgcccagatgctgcctttccctggcatggacaagtccattgctgcggtg
tgtactttctacatgagggggaattgcagtaagagcgtcaactgtccgttccgacatgtg
cgcggcgaccggactgtggtgtgtaagcactggctgcgtggcctttgtaagaagggcgac
cagtgtgagtttctccacgagtatgacatgtccaagatgcccgagtgttacttctactcc
agattcaatgcttgccacaacaaagagtgtcccttcctacacatcaacccggacatgaaa
atgaaggactgtccctggtacgaccgagggttctgccgccacggaccgcagtgccgcaac
cgtcatgttaggagggtcctctgcatgagttattttgctggtttctgccctgatggtccc
agctgtaaatttatgcatccgaggtttgagttgccacaggtgatggatgacaagcagacg
tcacacaagaagcagggtatcacttgtcactactgcggggagacgggacacaaggcttca
cagtgcttcaaggcaaacccagagttgagggagcagaacgccatcattagcttagcgtca
ggaggccccaagaaccaaccgggcaaggaggcgtcgtcacagaatagctatgatactggc
aacagactggataacatcacctgcttcaagtgcggtgaacaggggcacttcgctaatcgg
tgcacgaagggtcagtttgctttcctcagctctggcaactga
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