Scylla paramamosain (green mud crab): 135093367
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Entry
135093367 CDS
T11531
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135093367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprm03400
]
135093367
DNA repair and recombination proteins [BR:
sprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135093367
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
135093367
NCBI-ProteinID:
XP_063848686
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Position
42:2934389..2952522
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AA seq
1289 aa
AA seq
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MAKQMSIASFFTKSPGPGKTKEQGSPRGNVKLRGKEFQLMDLVWAKLEGHPWWPALVCNS
PGENTFMRRNQIHVQFFDRPPTRGWVKDGLVKMYGPAGETGVPSYRDATWVEAVKEAGEA
EKLPRDDRSVLLVDMLPSDDDDDDLLEAMEEDDDEDDSDKSKENVAVNNMKNAHNGQPAK
GEPKPKRRRIILHSDSESEDDYKPPDESGESDDSASSGVDEGQVSESESESEVDSPVKEP
QNKRRKAEPLKTRNLNSSLSSSPRSASSPTSKLSSSVKAKLAVFAAKEAPPAKPAGQEED
WPFLKEPWLQPKNIMDRGRRRPDHPEYDPRTLYIPESFLAQQTPGMRQWWELKSHHYDTV
LFFKMGKFYELFHMDAVLGVQELGLIMMKGEKAHSGFPEVAYSRYSTALIEKGYKVARIE
QTETPEMMEKRCKNLARPTKFDRVVKREICQMTSRATRVYGSVDGEESEASTSHLLALAE
RPAKNGNDLSEYGVAFVDTSVGTFYLGQFVDDCHTSRLRTLLAHYPVAQILTERGRVSAK
TKLIVNALVPQNLREVLVPEKEFWTATKTLSFLLEGPYFKREGEAATQWPKALKDMMDEG
DSLGKTPQEGKELALSAMGALTWYLMQCRLDEQLLTRRKFEQYQPPDTVDVAGQGDSKAS
IPAFISGRHHMVLDGTTLHNLEVFRNSSGGTEGTLVEQLDHCSTPFGKRLLRSWMCAPLC
SPAAIQRRLDAIADLRNNLGLMDEVILLLKTLPDLERMLAKVHTHGLSRQSSHPETRAIY
FEEIKYNKKKVEGFLAGLKGFKTCMQIVKKFKGVRESLASSLLKNCVTTTDNNGTFPVLD
EALTFFDNAFDQAEAQKEGKIVPRAGVDAEYDEAMEQIDSTKKSLAEYLKEQCKHFGTKV
VYWGNDKKRYQLEVPEHACRRAGDDYELVSQRKGHRRFWTSTTRELLADMIAGEEQRNTS
LSDIARRIFNQFDQHQKQWEAALQCVATLDVLCSLTIFSRGAETVQPEVISPQNGDQPFL
EIRNGLHPCLLSTMADKFIPNDVVVGGPAEDAHRPLVLITGPNMGGKSTLMRQTALICLL
AQLGSYVPAEACRLTPVDRVFTRVGASDRIMAGESTFFVELAETSSILQHATRHSLVLVD
ELGRGTATYDGTAIASGVVDALALRGCRTMFSTHYHALVDHFSENSNVSCGHMACMVEGG
EDDDDPSQETITFLYKFTDGSCPKSYGFNVARLAGLPETVIRQAREKARELEMINLKKHA
FSRVVNALGAKPGVLRETLSEAFKSLRVE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcagatgtccatagcctcattcttcactaagtccccgggtccaggcaagacc
aaggagcaagggtcaccccgggggaacgtgaaacttagagggaaagagttccagttgatg
gacttggtgtgggccaagctggagggacacccatggtggccagcgctggtgtgcaacagt
ccgggggagaacaccttcatgcggcgcaaccagattcatgtgcagttctttgacaggcct
cctacacgcggctgggtgaaggatggcctggtgaagatgtatggacctgccggggagact
ggtgtgccatcctatcgtgatgccacatgggtggaggcagtgaaggaggctggggaggcg
gagaagctgccccgggatgaccgctcggtgctgctggtggacatgctgccctcagatgat
gatgatgatgacctgctggaggccatggaggaggacgacgatgaggatgacagtgacaag
agcaaggagaatgtggctgtcaacaacatgaagaatgcccacaatggccagccagccaag
ggggagcccaagccaaagcgacgcagaattatccttcattctgacagcgagtcagaggac
gactacaagccacctgatgagtcaggagagagtgatgactcggccagctcaggtgtggat
gagggacaggtgtctgagtcagagagtgaatcagaggtggactcaccagtcaaggaaccc
caaaataagcgcaggaaggcggagcccctcaagacccgtaacttgaacagttccttgtcg
tcgtcgcctcgcagcgcctcctctcccacctccaagttgtccagcagtgtgaaggcgaag
ctggctgtgtttgcagcaaaggaggcaccaccagccaagccagccgggcaagaggaggac
tggcccttcctgaaagagccctggctgcagcccaagaacatcatggaccgggggaggcgg
cgacctgaccacccagaatatgaccctcgcacactgtacatcccagagtccttcttggcc
caacagactcccgggatgcgtcagtggtgggagttgaagtcccatcactatgacacggtg
ctgttcttcaagatgggcaagttctatgagctgttccacatggatgctgtgctgggtgtg
caggagctgggactgatcatgatgaagggggagaaggcacacagtgggttccctgaggtg
gcatacagccgttactccactgcactcattgagaaggggtacaaggtggcccgcatagag
cagactgagactccagagatgatggagaagaggtgtaaaaacttggctcggccaaccaag
tttgaccgtgtggtgaagcgggagatctgtcagatgaccagccgggcgacacgtgtgtac
ggctcagtggatggcgaggagtctgaggccagcacgtcacacctcctggcactggcagaa
aggccagccaagaacggcaatgacctcagtgagtacggagtggcctttgtggacaccagt
gttggcaccttctatctgggccagtttgtggatgactgccacacctccaggctgcgcacc
ctcctggcacactaccctgtggctcagatcctgacagaacgtggccgtgttagtgccaag
accaagctgatagtgaatgccttggtgcctcaaaacttgagggaagtactggtgcctgag
aaggaattctggactgccacaaagaccctcagcttcctgttggagggaccttacttcaag
agggaaggggaggctgcaacccagtggccaaaagcactgaaggacatgatggatgaaggt
gactccttgggcaagacaccacaggaaggcaaagagttggcactgtctgccatgggtgcc
ctcacatggtacctcatgcagtgccgtctggatgaacagctgctcacacgacgcaagttt
gagcagtaccagccccccgacactgttgatgtggctggccagggtgactccaaggcatcc
atcccagccttcatcagtggcaggcatcacatggtgttggacggcacaacactacacaac
ctggaggtgttcaggaatagtagtggtggcactgagggaacactggtggagcaacttgac
cattgctccacaccctttggcaagaggttgctaaggagctggatgtgtgccccgctgtgc
agcccggcagccatccagcggcggcttgatgccatcgctgacctgcggaataaccttggc
ctgatggatgaggtcatactgctcctcaagaccctgccagatcttgagaggatgttagcc
aaagttcacacccatggcctgagccggcagtcgagtcacccagagacccgtgccatctac
tttgaggaaatcaagtacaataaaaagaaggtggaaggcttcctggcgggcctcaaggga
ttcaaaacctgcatgcagattgtgaagaagtttaaaggtgtgagggagtcactcgcctcc
agtctgctgaagaactgtgtcaccaccacggacaacaatggcaccttccctgtcctggat
gaggcactcaccttctttgataatgcttttgaccaggctgaggcacagaaggaagggaag
attgtgccacgagctggtgtggatgcagagtatgatgaggcgatggagcagattgactcc
accaaaaaaagtctggcagaatacctcaaggaacagtgcaaacactttggcaccaaggtg
gtgtactggggcaatgacaagaagcgctaccagcttgaggtgccggagcatgcctgccgc
cgcgctggggatgactacgagctggtgagtcagcgcaagggtcaccgccgcttctggacc
tccaccaccagggagctgctggccgacatgattgccggggaggagcagcgcaacacctcc
ctgagtgacattgctcgccggatattcaaccagtttgaccaacaccagaagcagtgggag
gcagccctgcagtgtgtggccaccctggatgtgctctgctcactcacaatcttctcccgt
ggagcagagactgtgcagccagaagtgatcagtccccagaatggtgatcagccgttcctt
gagattcgcaatggtctccacccgtgcctgctgtccaccatggcagacaagttcatcccc
aacgacgtggtggtgggagggccggcagaggatgcccaccgcccgctggtgctcataaca
gggccaaacatgggaggcaagtccaccctgatgcggcagacggcactcatctgcctcctg
gcacagctgggctcctatgttcctgctgaagcctgccgcctgacacctgtggaccgagtg
ttcacccgcgttggtgcctcagaccgcatcatggcgggggagtccaccttctttgtggag
cttgctgagacttcctccatcttgcagcacgccacccggcactccttggtgctggtggat
gagctagggcgaggcacggctacctatgatggcactgccattgcctctggagtggtggat
gcccttgctctccgtggctgccggacaatgttctccacccattaccacgcattagtggac
cacttctctgagaactctaatgtctcctgtggccacatggcgtgcatggtggaaggtggg
gaggatgacgatgacccatcacaggagacaatcaccttcctgtacaagttcacagacggg
tcgtgtcccaagtcttatggtttcaatgtggctcgtcttgccggcctgcccgagactgtg
atccggcaggcgagggagaaggcgagagagttggagatgatcaacctgaagaagcatgca
ttctccagggtggttaatgctctcggggccaagccaggtgtactgagagaaactctgtct
gaggccttcaagtccctgcgtgtggagtga
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