Scylla paramamosain (green mud crab): 135093596
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Entry
135093596 CDS
T11531
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
sprm
Scylla paramamosain (green mud crab)
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprm03021
]
135093596
Transcription machinery [BR:
sprm03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
135093596
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
135093596
NCBI-ProteinID:
XP_063849059
LinkDB
All DBs
Position
43:6592456..6650077
Genome browser
AA seq
2289 aa
AA seq
DB search
MMSTNSQTNGASLEDCHTNFFALTDLCGIKWRVYMWDNPGGSCYATGGGGGGGGGGPADP
LEDPVLMSYSRMIAADVLCVWRKTWRGPQDTPSSPHMSQHQHHHAQHQLRHSLRHSPKEL
WVFWYGDEPDLTNLLAPELLRCEEERGAWDWESGLSYECRTLLFKALHNLIERCLLTRDF
VRLGRWFVQPYEGPEGVPGSSSTHLSFSLSFFVHGESIVCASVDVRQHPPVRQLTRKHLL
LAQQSNHGVPVILAPYGLSGTLTGVSYRHSDPSVQKLLDEWRQFFPVETKAPPNESLEPP
LPAAVEVIVGGHKMRYPTCYVLVTDLDDYLMAGRGNTTVVNVGQAAQGSLKGGLTSEASS
EASETTNLPVHNSPFMASTHTLLASEYIGCGGRGLGWSRGMCERVWQDVVHSPGQQPPPQ
HDGLTPEAIPAEIAGHWEFSDPATKISCSCAKCRRGRVSNKGCSSSKGRGGKLGGGGGSG
RLRGGGCSLAGCIPFHKRPPATPLAEADQCGMPAIEDSELLQATARLSGAGTPSGGSGGG
GFGGYKSGGVTTPGSVPSLRLTGVSDGPPPSVDSPASITPSPLPTPHSQPSVPHHDPTMP
TLSPHPPPSNTSVGDPPTPAPPDSVDVKPSVSDLIGPKSVSSPNTQGLSPLVGGDRSNGV
ESNETPSSIGGSGSSNSSGGGGSGGGSNSSGSGGGSGGSGSGGGSGGGGGGGSGSSSGSS
SGSGGGASGGGGGGSNSTSSSNSTGSGGPPRGLKRPSLPGTDYHSLLEQEKPSTVLYDYT
KLNAWLHHPVKRFKPAEPKVEEPLWPPYRPAHIQEKMEPYRQEVGQEVPEMNGLPLKHPC
SIKRPDDPYDFEDDLGSGATLETYKRKDGLDKEEAKTPSSEQSTQDPHSPCQPKKTTGNL
YTAAGLQPSYADLEDMFDSDSPVDDGTFPDHTPPGSNKPSGGPEDTAAVLSNKSGGAGSN
KSSVNASLVELTKMFPTPPSHEHNPDHDPVLEDAISIKTERVEEPRLSQVQEPSGHPSRE
EQPLVPAVYQPPTVSMFVGSTKYAPLTNLPSQEHKMAVSIPEDWLYKPSWQFPVSEKPHS
TAPPIVHVGPHSGAPSSSTPTSHSQKAGVSPISPMPPSLGGSTSDGGPGSQRGPGSVGPA
SAGPPINYELTSPASNQSSYLSKALPSVEAAGPTLGMSQVPEATSLIVNIALQDSSINLF
RDHNFDSCTMCVCNNNQRIVGNIRGNDGALYLPPTQLSVEEESISCNCGFSAVVNRRLAF
QAGLFYEDEVDLTGLHDALANECKKQSLHLLTDNNNKGTENSDREGGATGGTGTGGTGTG
ATASAAVSGAGTGPGSGGGTGTLDQLPQSLFRLLQSQCLVTLSTPSSVLYRSTTVYQNTR
RDILLNIVDYKDGNEIAYLAVEQSRGGGLSGITEGESGPAGIRLQCMHKWCYYQFNGPRC
SRDIVRCMKALQPHLQEAIQKKGRRLNWEPVFSVDGPLTWRQFHRMAVRGTEDMAEPLPI
PMLLAGHDRDWLSVAPQSLRHWEKLLLEPYSQQRNVAYVVVAPDNEFILSHVRTFFKELS
SIYELCRLGRHSPIQRVLRNGIMRISKTAASKVANEPLEEWFSLLGDSHMSTKLKVYAQV
CRHWLAPHLATLNMDKSLFETHGSSKATERQAPSPMPPPSSENAATPNPSTTPTQTQEPD
TATYSSSNTTSSSATPSSQSSSTVLGSGASLNEPDEDDSPPPAILVYLVDPFNVGEDHPD
MHRLVTLGLLRCYEHMLEGLPESMQNNVYLQIISLESILELASDSHDRSRHIDQLKSLAF
SVFMQCRRTLTHNASVKSLTGFGPAAVYDAFLKPKEASLAAEEKRLAPYHIFSPAYILAP
IKESRGTYREAQEALGVPREKSTILNCTYCLSEDQRWLLATATDDLGEILETVTISIEIP
NRTRRKKASARRIGLKKLMDWILSVMSIGVHPWRLIVGRLGRMGHGELKGWSSLLSRKSL
IQASKNLKEMCKQCAYLFPGDAPCILSACLVSIEADSSFRMMPDMFTPDERFGQNSQNCN
LSTPEDLTCTHILVFPTSAKTQSAQKMFQDEQTFDENADLLLDNDVENDIDVVMDGMPMG
LSINELLMLDTGPNQDDQLEDGGGHRDSLSQPSSPIMGAGGRTSPSQFSGQARSNGVVLV
DPQEDGRGSVLQQPLALGYYVSTASTGRLPRWFWSACPHLEGSCPVFLKSALHLHSPGIT
QSEEFVHNTNNKVHPLDSSYTTDVLRYVLEGYNGLSWLVLDPAKQDRRSCLPLHMQVLAH
LYNIMAALV
NT seq
6870 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccacgaactcgcaaacgaacggggcaagcctagaagattgccacaccaatttc
ttcgccttgacggacttgtgtggaataaaatggcgagtttacatgtgggacaaccctggc
ggaagctgctacgcgactggcggcggcggcggcggtggcggcgggggtccagctgacccc
ctggaggacccggtgctgatgtcctactcccgcatgatcgccgccgacgtgctgtgcgtg
tggcggaagacctggcgagggccgcaggacaccccctcctctccgcacatgtcccagcac
cagcatcaccacgcccagcaccagctccgccactccttgcgccactcccccaaggaactg
tgggtcttctggtacggcgacgagccagacctcaccaacctgctagccccggagctcctc
agatgtgaggaggaacggggtgcgtgggactgggagagtggcctgtcctatgaatgcagg
acgttactcttcaaggcgctccacaaccttatagagagatgcctcctgacacgggacttt
gtgcgtcttggacgatggtttgtgcagccatatgaggggccggagggcgtccctggcagc
agcagcacacacctgtcgttcagcctctcgttctttgtccacggcgagagcatcgtgtgt
gccagcgtggatgtccgccagcaccctccagtcagacagctgacccggaagcatcttctt
cttgcacagcagtccaaccatggtgtcccagtgatattggctccatacgggctgagtggc
accctgactggagtgagctaccgccactctgacccctccgtacaaaagctgctggatgag
tggaggcagttcttccctgtcgagaccaaagctccgcccaatgaatccctggagccccca
ctcccagcagctgtggaagttattgttggtggccacaagatgcgttacccaacctgctac
gtgctggtcaccgacttggacgactacttaatggctggccgggggaacaccaccgtggtg
aacgtgggtcaggcggcgcagggcagcctcaagggcggcctgaccagcgaggcatcctca
gaggccagcgaaaccaccaacctgcctgtccacaactcccccttcatggcctccacccat
accctccttgcctcagaatacattggttgtggtggccgggggctgggctggtcaaggggg
atgtgtgagcgggtgtggcaggatgtggtgcacagccccggccagcagcccccaccccag
catgatggcctcaccccggaggccatccctgccgagatagctggccactgggagttctcg
gaccctgctaccaagatcagctgttcctgtgccaaatgcaggaggggtcgggtcagtaat
aaagggtgtagcagcagtaagggccggggaggaaaacttggtggagggggaggcagtggg
cgtcttcgggggggcggctgctccctggccggctgcatccccttccacaagaggcctcct
gcaacccccttggctgaggccgaccagtgtggcatgccagccatcgaagattcagaactt
ttgcaggccactgccagattgagtggagccgggacaccaagtggagggagtgggggcgga
ggattcggaggttacaagagtggaggggtgaccacgccaggtagtgttccttccctcagg
ctgaccggggtgagcgacggccctcccccctcagtggactcccctgcctccatcacaccc
tcacccctgcccacaccccactcccagccctctgtgcctcatcatgatcccaccatgcca
accctcagcccacaccctcccccctccaacacatcagtgggggaccctcctacccctgcc
ccccctgactcagtggatgtcaagcccagtgtgtctgacctcattgggccaaagtctgtg
tcatcccccaacacccagggcctgtctcccctggtgggtggggacaggagtaatggtgtg
gagtccaatgagacccccagcagtataggtgggagtggcagcagcaatagcagtggtggt
ggtggcagtggtggtggcagcaacagcagtggcagtggtggtggcagtggcggtagcggc
agtggtggtggcagcggtggtggcggcggcggtggcagtggcagtagcagtggcagtagc
agcggcagtggtggtggcgccagtggtggtggtggtggtggcagtaacagtaccagcagc
agtaacagcacaggcagtgggggtcctccgagggggctgaagagaccttccctgcctggc
acagactaccactcacttctggagcaggagaagccaagcaccgtcctctatgattacacc
aagcttaatgcatggctccaccaccctgtcaagagattcaagccagcagaacctaaggtg
gaggaacctctctggccaccctacagacctgcccacatccaggagaagatggaaccttac
aggcaggaggttggccaggaggtccctgagatgaacgggctgcccctgaagcatccctgc
agcatcaagaggccagacgatccttatgactttgaggatgacctaggttcaggggccacc
ttggagacctacaagaggaaggatggtctggataaggaggaggccaagaccccgagcagt
gagcagtccactcaagatcctcactctccttgtcagccaaagaaaaccactggaaacctc
tacaccgcagccggcctccagccatcctacgccgacctggaggacatgtttgactcagac
tccccagtggatgatggcaccttcccagaccacactccaccaggatccaataagccttct
gggggtcctgaagacactgctgcagtgctcagcaacaagagtggtggtgctgggagcaat
aaatcaagtgtcaatgccagtctggtggagctgaccaaaatgttccccactccaccctcc
catgagcacaaccccgaccacgacccggtgctggaggacgccatcagtattaagacagag
cgggtggaggagccccgcctgtcccaggtgcaggagccctcagggcacccatccagggaa
gagcagcccctcgtgccagctgtgtaccagccccccacggtgtccatgtttgtaggctcc
accaagtatgccccactgaccaacctgcccagccaggaacataaaatggctgtttccatc
ccagaagactggctctacaaaccttcctggcagttcccggtctctgagaagccccacagc
acggccccgcccattgtccacgtggggcctcactctggggctccttcttcttctactcct
accagccatagccagaaggctggggtgtctccaatctctcccatgccccccagccttggg
ggatccacctctgatggaggcccaggctcccagcgagggcctggcagtgtaggacctgcc
tctgctgggccgcctatcaactatgagttgacttcgccggcctccaaccagtcgtcctac
ctgagcaaggcactgccctcagtggaggcggcaggccccacgctgggcatgagccaagta
cctgaagccacctcccttattgtgaacatcgccctccaggactccagcatcaacctgttc
cgggaccacaactttgactcctgcaccatgtgtgtctgcaacaacaaccagcgcatcgtt
ggcaacatccggggcaatgatggcgcactgtatcttcctccgacacagctcagtgtggag
gaggagagcatctcttgcaactgtggtttctcggctgtggtgaaccgccgcctggccttc
caggctggcctcttctatgaggatgaggtggacctcacaggcttgcatgacgccctggcc
aacgagtgcaagaagcagtcactgcacctcctcaccgacaacaacaacaagggaacagag
aactctgacagggagggcggggcaacgggagggacagggacaggtggaacagggacaggt
gctacagcgagtgcagcagtgagtggtgctggtaccgggccaggtagtgggggtgggaca
ggcacactggatcagctgcctcagtccctgtttcggctgcttcagagccagtgtctagtg
accctaagtaccccctccagtgtgttgtatcgctccacaactgtctaccagaacactcgc
cgggacatcctcctcaatattgtagactacaaggacggtaatgagatagcctatctggct
gtggaacagtctcggggtggtggccttagtggcataactgagggggagtctggccctgct
ggtatcaggttacagtgcatgcacaagtggtgctactaccagttcaatggacctcgttgc
tctagagacattgtgcgttgcatgaaggccctgcagccacaccttcaggaggctatacag
aagaagggacgcagacttaactgggaacctgtgttcagcgtggacgggccactcacgtgg
cgtcagttccaccgcatggccgtgcgtggcaccgaggacatggccgagcctctgcccatc
cccatgctgctggctggccatgaccgggattggctctcggtggctccccagtccctgcgt
cattgggagaaactgttgctggagccctactcacagcagcgtaatgtggcctatgtggtg
gtggcccctgacaacgagttcatcctcagccatgtacgcaccttcttcaaggagctgtcc
tctatctatgagctgtgtcggctgggaaggcactcccccatccagagggttttaaggaac
ggcatcatgaggataagcaagacagctgcctccaaggttgctaatgagcctctggaggaa
tggttctcccttctgggtgattctcacatgtccaccaagctcaaggtgtatgctcaggtg
tgtcgacactggctagcgccccatctggctaccctcaacatggacaagagcctgtttgag
acacacgggtccagtaaggccactgagaggcaggcaccctcacccatgcctccaccctca
tcagaaaatgcggccacgcccaacccctccaccaccccaactcagactcaggagccagac
accgctacttactcctcctccaataccacctcctccagtgcaactcccagctctcagagt
agtagcacagtgctgggatccggcgcgagcctcaacgagccggacgaggatgactctccc
ccgcctgccatcctggtatacctagtggaccccttcaacgtgggggaggaccatcctgac
atgcaccgcctggtgaccctgggactcctgcgctgctatgaacacatgctggagggtctc
ccggagagcatgcagaacaatgtgtacctccagatcatctccctggagagcatcctggag
ctagcgagtgattcccatgaccgttcccgtcacatcgaccaactcaagtccctggcgttc
tcggtgttcatgcagtgccgcaggacactaacccacaatgcctcagtgaagtccctcact
gggtttggtcctgctgctgtgtatgatgccttcctcaagccaaaggaagctagtcttgcc
gctgaggagaagcgcctcgccccataccacattttctccccggcctacatcctggctccc
atcaaggagagccgtggcacctacagggaagcacaggaggcattgggggtgccaagggag
aagtccaccatactcaactgtacctactgcctctctgaggatcagcggtggttgttggcc
actgcaacagatgaccttggggaaatccttgaaactgtcaccatcagcatagagattccc
aacaggacgcgaagaaagaaagcttcagcgcggcgcattggcctcaagaagctgatggac
tggatcctgagtgtcatgtccattggggtgcacccttggcgcctcattgtggggcggctg
ggaaggatggggcacggggaactgaaggggtggtcctccctgctctcccgcaagtccctc
atccaggcatcgaagaacttgaaggaaatgtgcaaacaatgtgcttatctcttccctggg
gacgcgccatgtatcctctctgcttgcctggtctctatagaagcagactcgtccttccgc
atgatgcctgacatgttcacgcctgatgagaggtttggccagaacagccagaactgcaac
ctgtctacgcctgaagacctcacctgtactcatatactagtgtttcccacctcagccaaa
actcagtctgcccagaagatgttccaagacgagcagacgtttgatgagaatgcagacctg
ctgctggacaacgacgtggaaaacgacatagatgtagtgatggatggcatgcccatgggc
ctcagcatcaacgagctgctcatgctggacactggccccaaccaagacgaccagctggag
gatgggggcggccaccgggactccctctcacagccctccagccccatcatgggggctgga
ggccggaccagcccttctcagttttctggacaggcacggtccaatggtgtggttttggtg
gacccccaggaggatggccgtggctcggtgctgcagcaaccacttgccctcggttattat
gtttctactgcctcgacaggccggttgccccgctggttctggtctgcttgccctcacctg
gagggctcttgtcctgtgttccttaagtccgccctccatctccactccccaggcatcact
cagtcagaggagtttgtgcacaacaccaacaataaagtccaccccctggactcctcctac
accacagatgtcctcagatacgtgcttgagggctacaatggcctgtcatggctggtgctg
gacccagcaaagcaggacaggaggtcatgcctgcccctccacatgcaggtccttgcccac
ctgtacaacattatggctgccctcgtatga
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integrated database retrieval system
