Scylla paramamosain (green mud crab): 135093857
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Entry
135093857 CDS
T11531
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03013
Nucleocytoplasmic transport
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135093857
09122 Translation
03013 Nucleocytoplasmic transport
135093857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135093857
03041 Spliceosome [BR:
sprm03041
]
135093857
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
135093857
Spliceosome [BR:
sprm03041
]
Complex C
Other components
EJC/TREX
135093857
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135093857
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
135093857
NCBI-ProteinID:
XP_063849500
LinkDB
All DBs
Position
44:complement(2506025..2536871)
Genome browser
AA seq
1496 aa
AA seq
DB search
MAAGGLFTLETWKNWEKSGKAELVQTIRHLIKENGENPGLSKPNQSPTKDLSRALYEFLS
AIVRGHLRRDYARPVLIDMVNWHPDMASQLVEITTLLDLETAAVERFSRNRDNLLGLLKS
LDADRLLKERLEIETLGDAGIVRHKKNFHTKQIKVKTKLFYKQQKFNLLREETEGYAKLV
TELNQEITDRITPNSMIQVIRSLIGGFNLDPNRVLDLILESLESRPHLHQFYTSLLSQYP
CESATISEILGFKLNTSAKEGGGKETQGIYTTISLLLQADILQLQDIYVWLTPEDSSMAE
EHQREEAEATEMAHRVNIVSTKDKDKEKEKEKEDEERERQEQQRNPERYLNNQKIQLCIA
LLQVGDWDHFQEISRRFPDFYLVSIPPISKALCNLIHTLFETVYRKVCHLPSRLQGTVIE
PLDNPRAVQPATNYNDLVLITFPMLTALGPHLCHDPGLMYKVLRTARHGLKQQVRVGPDG
MRGLFYYEFLDILDEVMLPALSMLDSNPCMAEEIWETLKFYPYQHRYKLYGRWKNETCNQ
HPALVRRRTALLKKAKFIMMRITKETIKPVSRGIGKLTHNNPAPIFHYILIQVQLYDNLI
GPVVDSFKYLTSLSYDVLGYCIVEILSENKDRIANDAMAISSWLQALSSFCGAVYKKYPI
DLGGILQFVANQLKAEKSIDLLILREIVQKMGGTDTLEDLTPDQLDAMCGGELLRREAGQ
YQQERNTKRSSVRLKEALLEHDLAIPLLLLTAQQRSSVVYNQTESPHLKLVGKLYDQCQD
TMVQFGSYLFQVVTIDELSGRMPPIGTLLSDCHVSADVAFFLARPLFINMLNAKYDELRK
QDKGEKKMTLEQKKMRYLEACSEVFGPIVTSIRPHFSIKVWEDMDPSFFLTFWTLTMSDL
EVPHHMYEKEIKKIDPNQPSSNKRKKEADRLLALKEKLQEEEKRQKEHVERVLARLQQEK
DRWFTLRGARSPKNDTVTAFLQLCLFPRCTFTTLDAIYCAKFVKMLHSLKTPNFSTLICY
DRMYCDITYTVASCTEQEAHRYARFLLGTLETVMHWHTSHNNYERECASYPGFVTKYRVS
RQEANDYVDYENYRHVVHKWHYKITKALITCLESGDYIQIRNAILILQGIIQRFPAIINL
AIVIEKRIEMVKLQERNSRNDLYVLANSYSGRLKAIKPNLPQEPEFHIVPKRTPAAQKVN
GTPDSTATSGGAGAGDGKGTPAEQVDGKQAKAEAMEVANGDVEAKEEREAKKGENNSKPT
KEKRDVAEKKGGGEEGEGKRPEEKKREEKEKKKEKEKEKEEREEKPRKRSKESKKIKQEE
EEYLEERDERERGERDREREREREREGSATSNTSSTSAKMDPPEASPRGSKRRKTDHSSK
NRGKEEASRRDHKHKERSKSREPESVPSPKESKKEKKERKRDRSQDDGVEVDQKRKKGGE
ERMKSNGRQEDEHKHRHRQVEAEEYYERYSSKDSHRADYDYEREYEKQTTRHKRKN
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggggggcttgtttacgctggagacttggaagaactgggagaaatctggcaag
gcggaactagtgcagacaattagacatctaattaaagaaaatggagaaaacccgggcctg
tccaagcctaaccagagcccaacgaaagatttatcaagagcactttacgagtttttgtcg
gccatcgttaggggacacttaagaagagactatgccaggcctgttcttatagatatggtg
aactggcacccagacatggcgtcccagttagtcgagatcaccacactgcttgaccttgag
acagctgcagtagagaggttcagcaggaatagggataacctgctgggtctgctgaagtca
cttgacgcggaccgactgctgaaagagaggctggaaattgagacgctgggtgatgctgga
attgtgcgccacaagaagaattttcacactaagcagattaaagtgaagactaagctgttt
tacaagcaacagaaattcaacttgctacgagaggagaccgaaggatatgccaagcttgtt
acggagcttaaccaggagataacagaccgaattaccccaaactcaatgattcaagtgatc
cgaagtcttataggtgggtttaatctggaccctaaccgcgtgctggacctcatcctggag
tcgctggaatctcggccccaccttcaccagttctacacgtccttgctgagtcagtacccg
tgtgaatcggcgaccatcagcgaaattctcggcttcaagttgaacaccagcgcgaaggaa
ggaggcggcaaggagacacaagggatttacaccacaatatccttgctccttcaggctgat
atccttcaactgcaggatatttatgtttggctgacaccagaagactcctccatggcagaa
gaacaccagagggaggaggcggaggcaacagagatggcacacagggtgaatattgtgtcc
acgaaggataaggataaagagaaggagaaggagaaggaggatgaagagagggaaaggcaa
gaacagcagagaaatccggaaagatatttaaacaaccagaagattcagctttgtattgct
ttgttacaagtgggcgactgggaccacttccaggagatttcaagaaggttccccgatttc
tacctggtgtcaatccctccaatcagcaaggctctttgtaacctgatccacaccttgttt
gagactgtgtaccgcaaggtatgccatctccccagccgcctccagggaacagtcattgaa
cctctggacaacccaagagcagtacagccagccacaaactataacgacctggttctcatt
acatttcctatgctgactgcccttggcccacacctctgccatgaccctggattaatgtac
aaggttctgaggactgcacgacatgggcttaagcagcaggtacgtgtgggtcctgacggc
atgcgaggactcttctactacgagttcctggacattctggacgaggtgatgcttccggct
ctctccatgcttgattccaacccctgcatggcggaggagatctgggagacacttaaattc
tacccttatcagcacaggtacaagctctatggacgctggaagaacgagacttgcaaccaa
cacccggcccttgtgaggcgccgaactgccctgttgaagaaagccaagtttatcatgatg
aggatcaccaaggaaaccattaagccagttagccgcggtattgggaagctgacccacaac
aaccctgcgccgatattccattatatccttattcaagtccagctgtacgacaacttgata
gggccagtggtggacagcttcaagtacctcacctctctctcctatgacgtgttgggctac
tgcatcgtggagatactatccgagaacaaagacaggatagccaatgacgccatggccatt
tcgtcgtggctccaggcgctgtccagtttctgcggggccgtgtacaagaaataccccatt
gatcttggtgggattctacagtttgtggccaaccagctcaaggcagagaagtccattgat
ctgttgattctgagggagattgtgcaaaaaatgggagggactgataccttggaggacctc
acgccagaccagctggacgccatgtgtggaggagaattactgcggcgagaggcggggcag
taccagcaggaacgtaacacaaagcggtcatcagtgcgtctgaaggaggcgttgctggag
cacgacctggccatccccttactgctcctcacggcacagcagcgctcctctgtcgtgtac
aaccagactgaatcgccgcacctcaagctggttggcaagctgtatgaccagtgccaggat
acaatggtgcagtttgggtcgtacctgttccaagtggtgacgattgacgaattgagtggc
cgcatgccccccattggcaccctgctgtccgactgtcatgtttcagctgatgtggccttc
ttccttgccaggccactattcatcaatatgctcaatgcaaaatatgacgagcttcggaaa
caagacaaaggagaaaagaaaatgactttggagcagaagaaaatgaggtacctggaagca
tgttctgaagtgtttgggcccatcgtcaccagcattcggcctcacttcagcatcaaggtg
tgggaagacatggacccgtcattctttctcaccttctggacgctcaccatgtctgaccta
gaagtgccccaccacatgtacgagaaggagattaagaagattgatcctaaccagccctcc
agtaataagaggaagaaggaagctgacagacttcttgccctgaaggagaaactgcaggaa
gaggagaagagacagaaagaacatgtcgagagggtcttggcacggctgcagcaggaaaag
gacagatggttcactctcaggggcgctcgttcccccaaaaatgacacagtgacggctttc
ctgcaactgtgtctcttccctcgttgcaccttcaccaccttggatgcgatttattgtgct
aagtttgtgaaaatgttgcacagtttgaagacaccaaatttctctaccctgatatgctat
gacaggatgtactgcgacatcacctacacagtcgcctcgtgcacagaacaggaggcacac
cgctacgcccggttcctcctcggcactctggagactgtgatgcactggcacacctcacat
aataattacgagagggagtgcgcgtcctaccccggcttcgtcaccaagtatagggtgtca
cgtcaggaagcaaacgactatgtggattacgagaactaccgccatgttgtgcataagtgg
cattacaagattactaaggcgctgatcacgtgcctagagagtggtgactacatccagatc
cgcaatgccatcctcattctgcaggggatcatccagaggttcccagccatcatcaacctt
gccattgtcattgagaagaggatagagatggtgaagctgcaggaacgaaacagccgcaac
gacctgtacgtgctggccaacagttactcagggcgtctcaaggcaattaaacccaacctg
ccacaagagcctgagtttcatattgttcccaagcgcacaccggcagcacagaaggtcaac
ggcaccccagacagcaccgccacatcggggggtgccggcgcaggtgatggcaaaggcact
cccgcagaacaagtggatggtaaacaagcaaaggctgaggcaatggaggtggccaatgga
gatgtggaggcaaaggaggaaagggaggcaaagaagggagagaataacagcaaaccaacc
aaagagaagagagatgtggcagagaagaaagggggaggagaggaaggagaagggaagagg
ccagaggagaagaagagagaggagaaggaaaagaagaaagagaaggagaaggagaaggag
gagagagaggaaaaaccaaggaagagatcaaaagaatcaaagaagataaagcaggaggag
gaagagtacctggaggagagggatgagagggagcgaggcgagagagacagggagagagag
agggagagagagagagagggcagcgcgacttccaacacttcttcaacttctgccaagatg
gatccacccgaggcttcaccaagaggttcaaaacgccggaagaccgatcacagcagcaag
aaccgcggcaaggaggaagcctctcgtcgtgaccataaacacaaagaaagatcaaaatca
agagaaccagagagtgttccttcacctaaggagtccaagaaagagaagaaggaaaggaag
agggaccggtcgcaggatgatggagtagaggtggaccagaaacggaagaagggaggagag
gaacggatgaagtcgaacggaagacaggaagatgaacataaacacagacatcggcaggtg
gaggcggaggagtactatgaaaggtattcgagcaaggactctcatcgcgcggactatgac
tatgagcgagagtatgaaaagcagaccacacgccataaaaggaagaactaa
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