KEGG   Scylla paramamosain (green mud crab): 135094592
Entry
135094592         CDS       T11531                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
sprm  Scylla paramamosain (green mud crab)
Pathway
sprm03013  Nucleocytoplasmic transport
sprm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sprm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135094592
  09122 Translation
   03013 Nucleocytoplasmic transport
    135094592
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sprm03019]
    135094592
   03041 Spliceosome [BR:sprm03041]
    135094592
Messenger RNA biogenesis [BR:sprm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     135094592
Spliceosome [BR:sprm03041]
 Complex C
  Other components
   EJC/TREX
    135094592
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    135094592
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 EIF3I WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_NOL10_N Beta-prop_IFT140_1st eIF2A DSE1_N RMC1_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_WDR75_1st WDR90_beta-prop_4th NBCH_WD40 Tricorn_2nd Beta-prop_EIPR1 PAC11 Beta-prop_HPS5 Beta-prop_TEP1_C TRM82_WD CFAP251_N PROPPIN ASA1 Peptidase_S9_N WD40_RFWD3 PD40 Beta-prop_SCAP Beta-prop_WDR11_1st Beta-prop_VPS8 Beta-prop_ELP1_1st Cytochrom_D1 KNTC1_N Beta-prop_NUP159_NUP214 DPPIV_N Beta-prop_Nup120_160 WD_LRWD1 DUF5121
Other DBs
NCBI-GeneID: 135094592
NCBI-ProteinID: XP_063850898
LinkDB
Position
46:complement(4530164..4620561)
AA seq 327 aa
MGSSYLEEMRTYFESHNKQKEYVGHNSKVHTIGWNADGRRLASGSYDKCVTIFVFDGHRE
TLRKDYTYKGHGDSVDQLCWHPTHSEQLTSASGDKTVRIWDTRTHKCSATINTKGENINI
TWSPDGQTIAVGNKEDLVSFIDVRSQKIRHEQQFKFEVNELSWNNTNDLFYLTNAQSGQG
YIHIYTSYPEMELVHSIHAHPGNCICIKFEPQGRYFATGSADALVSIWDVQELYCKRTLP
RLEWPVRTLSFSSDGQLLASGSEDQAIDVAHVETGEQVAHISVAYPTFTLAWHPKHFLLA
YACDDKDDRDRDRDAGTVKLWGLGDRP
NT seq 984 nt   +upstreamnt  +downstreamnt
atggggtcgtcttacctggaggagatgcggacatactttgagagccacaacaagcagaag
gagtacgtaggtcacaactccaaagttcacaccattggctggaatgctgatggccgccgc
cttgcttcggggtcttatgacaagtgtgttaccatctttgtgtttgatggacaccgcgag
actctgcgcaaggactacacctacaaagggcatggtgacagcgtagaccagttgtgttgg
caccccacgcactcggagcagctcacctctgccagcggggacaagacggtcaggatttgg
gacacccgcacccacaagtgttccgcgaccatcaatacaaaaggggagaacatcaacatc
acatggtctccggacggccagaccattgctgtggggaacaaggaggacctggtgtcgttc
attgacgtccgcagccagaagattcgtcacgaacagcagtttaagttcgaggtcaacgag
ctgtcgtggaacaacaccaacgacctgttctacctcaccaatgcgcagagtggtcaaggc
tacatccatatatatacgagttatcctgaaatggagctggttcactcaatccacgctcac
ccagggaactgtatttgcatcaagtttgagccacaaggacgctactttgccacagggtca
gctgatgccctggtctccatttgggatgttcaggaattgtattgtaaacgtacattgccc
aggctggagtggccagttagaaccctgagtttctccagtgacgggcagctgctggcgtca
ggtagtgaggaccaggctattgatgtggctcacgtagagacaggggagcaggtggcccac
atcagcgtggcctacccgaccttcacgctggcctggcaccctaaacacttcctgctggcc
tacgcgtgtgatgacaaggatgaccgtgacagggaccgagatgctggcacggtcaagcta
tgggggctgggagacaggccctaa

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