Scylla paramamosain (green mud crab): 135094783
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Entry
135094783 CDS
T11531
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03022
Basal transcription factors
sprm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135094783
09124 Replication and repair
03420 Nucleotide excision repair
135094783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprm03021
]
135094783
03036 Chromosome and associated proteins [BR:
sprm03036
]
135094783
03400 DNA repair and recombination proteins [BR:
sprm03400
]
135094783
Enzymes [BR:
sprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135094783
Transcription machinery [BR:
sprm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135094783
Chromosome and associated proteins [BR:
sprm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
135094783
DNA repair and recombination proteins [BR:
sprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135094783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
nSTAND3
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
135094783
NCBI-ProteinID:
XP_063851220
LinkDB
All DBs
Position
46:complement(7537268..7548683)
Genome browser
AA seq
758 aa
AA seq
DB search
MILDVDGMRVFFPYDFIYPEQYSYMLDLKRALDAKGHCLLEMPSGTGKTISLLSLTVSYL
LAFPQTLSKLIYCSRTIPEIEKVIEELRKLRIYIEKETGEASNIIGVGLASRKHLCINPE
VSKARDSKVIDSGCHALTASYVRARAQRDDTIPQCEFFEKFDLHGREFPLPAGCYNFDDL
RDFGHQKGWCPYFLARHAVVAANVVVYSYHYLLDPKISEIVSKEMKREACVVFDEAHNID
NICVDSMSININRKILDKAKTAITHLTEHIQRVKMSDSNRLQEEYNRLVAGLRQAASQQD
LISNPILPKDILEENVPGNIRMADYFISFIRRLVDFLKMRLTVTHAVQESPAGFLKDIRA
RAFIDRKPLRFCSERLASIVRSLELTDVSDLAPLVAVANFATLVSTYLQGFAIIIEPFED
KAPNIPNPILYLRCLDSSIAIKPVFTKFQTVVITSGTLSPLDMYPKILDFHPVIQSSFTM
TLARPCILPMIVTKGNDQVSISSKFESRDDPAVVRNYGKLLVEMSRCVPDGMVCFFTSYL
YLENVVATWYDHGIISDLQRHKLVFIETQDDAETSLALINYMKACDRGRGGLLLAVARGK
VSEGIDFDHHYGRCVIMMGIPFMYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQC
VGRVMRGKTDYGIMLFADQRFSRADKRNKLPRWIQEYLMDSKCNLSTEEAVQLTRPWLRQ
MAQPFTRDDQLGVSLLTLEQLNSADSIAQVQRRAQITL
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgattctggacgtggatggcatgcgggtgttcttcccgtatgacttcatctaccctgag
cagtactcctacatgttggacctcaagagagccctggatgcaaagggacattgcctgctg
gagatgccctcagggacaggcaagaccatctccctgctgtccctcactgtttcctacctc
ctcgccttccctcagacgctcagcaagctcatttactgctcaagaaccattccagagatt
gaaaaggtaatagaggagctgcgcaaactgaggatatacattgagaaggagacaggggag
gcctcgaatatcatcggcgtgggtctggcatcccgcaaacacctgtgcattaatcctgag
gtgagcaaggcacgggactctaaggtaattgacagcggctgccacgccctcaccgcctcc
tacgtgcgtgcccgggcgcagcgggatgacaccatcccccagtgcgagttttttgagaag
tttgacctccacgggcgagagtttcccctcccggctggttgctacaattttgacgacctg
cgggactttggacaccagaagggatggtgtccgtacttcctggcgagacatgcggtggtg
gcagccaatgtggtggtgtacagctaccattacctcctggaccccaagatttcagagatt
gtgtcaaaggagatgaagcgggaggcctgcgtggtgtttgacgaggctcacaacattgac
aacatctgcgtggactccatgagtataaacatcaaccgcaagatcctggacaaagccaag
actgccatcacacacctcaccgaacacatacagagggtgaagatgtcagacagcaacaga
ctgcaggaggagtacaacaggctggtggcagggctcagacaggcagcctcccagcaggac
ctcatttccaacccaatactgcccaaggacattctggaagaaaacgtgccaggcaacatt
cgcatggccgactatttcatttccttcatccgtcgccttgtggattttctcaagatgcgc
ttgacagtgactcacgctgttcaggagtcacctgctggttttctgaaggacattcgtgcc
agggctttcattgaccgcaagcctttgaggttctgctctgagcgtctggcatcaatcgtc
cgctcattagagttgacagacgtgagtgaccttgccccgctggtcgctgtggccaacttt
gcgaccttggtgtccacttacctgcagggatttgccatcatcattgagcccttcgaggac
aaggcaccaaacatccccaacccgattctgtacttaagatgcctcgactcctcaatcgcc
atcaagccagtgttcaccaagttccagaccgtcgtcatcacctcaggaaccctctccccg
ctggacatgtacccgaagatcctggacttccaccctgtcattcagagctccttcaccatg
acccttgcccggccctgcattttacccatgatcgtgacgaagggcaacgaccaggtatcc
atctcgtccaagtttgagtctcgcgatgacccggcagtggtgaggaattatgggaagctg
ctggtggagatgtcgcggtgtgtacctgacggcatggtgtgtttcttcacctcctacctg
tacctggagaacgtggtggccacctggtatgaccatggcatcatcagtgacctgcagagg
cacaagctggtcttcatagagactcaggatgatgcagagacttccctcgctcttattaac
tatatgaaggcgtgtgacagagggcgtggcgggctgctgctggctgtggcacggggcaag
gtgtccgagggtatcgattttgaccaccactacgggcggtgcgtcatcatgatgggcatc
cccttcatgtacacacagagcaggatactcaaggccaggctggaatacctcagggatcaa
ttcaatatccgagagaatgacttcctcacgtttgacgccatgaggcacgcagcgcagtgt
gtggggcgagtcatgcgtgggaagactgactacggcatcatgctcttcgccgatcagagg
ttctcccgggcagacaagaggaacaagctgcctcgctggatccaggagtacctgatggac
agcaagtgtaatttatccactgaggaggctgtgcagttaacccggccgtggctgagacag
atggcacaacctttcacccgcgatgaccagcttggggtatccctgctgaccctggagcag
ctcaactcggcagacagcattgcccaggtgcagcgtcgggcacagatcactttgtaa
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