Scylla paramamosain (green mud crab): 135094971
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Entry
135094971 CDS
T11531
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135094971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sprm03041
]
135094971
Enzymes [BR:
sprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135094971
Spliceosome [BR:
sprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135094971
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
nSTAND_NTPase5
Cas3-like_C_2
PWI
Flavi_DEAD
nSTAND3
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
135094971
NCBI-ProteinID:
XP_063851586
LinkDB
All DBs
Position
47:2702561..2708733
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AA seq
1037 aa
AA seq
DB search
MGDTALKSWVGQQLHRVMGMSDATLAEYLIELSRRRASPALVLAELREEVPVDGKIEAFV
EELFRRVNDVGGSSSSKGGTSQRREAGRGEQRKRKAEDSSDSEGEGPQLLSLPGRMKEEL
TEEQQRVMDLAERDEYAKRLRERDEARTKNVAEKGDQKAFEEAARRLQLEKEDRTKALPK
LRVESRRKYLVKRKDDKIRELEADIQDDEYLFEDKDLTEKERKEREYRRTVLQLAKDYEK
VRDAENVQRYVMPEEGASVDDSYVEVDEREKKRGYEQRKWEEDQMRGTALSFGARDKAQH
RHDKEYNLVLEDEIEFIKSLPLKGTRKKTKKKKKKKEEDSDSSSSSDDGDEEEEGGEEEE
EEEEEEDMMKAPDNTKMSIQEVRRSLPVFPFRDSLLGAIRDHQVLIVEGETGSGKTTQIP
QYLYEAGYCDDGKKVGCTQPRRVAAMSVASRVAQEMDKKLGNEVGYSIRFEDCTSERTRI
KYMTDGMLMREFLVDPSLEGYSVIIVDEAHERTLHTDILFGLLKDVARFRPDLKLLVSSA
TLDSEKFSDFFDEAPVFRIPGRRYPVHIYYTRSPEANYIEAAAVTVLQIHITQRLGDVLV
FLTGQEEIEACQEILTERVKALGSRIRELIVLPIYANLPSEMQAKIFEATPPGARKVVLA
TNIAETSLTIDGIVYVIDPGYAKQNYFNARSGMESLVVVPISRASANQRAGRAGRVGPGK
CFRLYTKWAFENEMEENTVPEIQRVNLGNVVLQLKSLGIGDLINFDYLDPPPAETLILAM
EQLYALKALNHKGELTLTGRKMAELPVDPMMARMILAAGEFGVVEEVLTVAAMLSVNGAI
FYRPKDKAIHADTARKNFFHPDGDHLTLMNVYSEWAGTEYSSQWCYEVFVQHRSMKRARD
IRDQLAGLMERVEIQLTSNPADSMAIRKAVTAGYFYHVARFSKGGMYKTAKKGQTVMMHP
QSCLAEDLPRWVVYHELVLTTKEYMRNVVVIDGKWLLEVAPHYYRDSEVQDTTSKKMPKV
KGKAKEELTKEYADPVP
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacacagcgctcaagtcctgggtgggtcagcagctgcacagggtgatggggatg
agcgacgccacactggccgagtacctcattgagttgtctcggcgccgtgcctctcctgcg
ctggtgctggccgagctgagggaggaggtgcctgtcgacgggaagattgaagcctttgtt
gaggagttgtttcggcgtgttaatgatgtcggcggcagcagcagcagcaaaggcggcaca
tcacagaggagagaggcggggcggggggaacagaggaagcgcaaggcagaggacagctca
gactccgagggagagggcccacagctgctcagcctgccagggaggatgaaggaggagctg
acagaggagcagcaacgtgtcatggacctggcggagcgggacgagtatgccaagcggctg
agggagcgtgatgaggcgaggaccaagaacgtggcagagaagggtgaccagaaggcattc
gaggaggctgcgcggcgcctgcagctggagaaggaagaccgaaccaaggccctgcccaag
ctacgggtagagtcgcggcggaagtacctggtgaagcggaaggatgacaagatccgggag
ctggaggcagacatccaggatgatgagtacctctttgaagacaaggacctcacggagaag
gagcgcaaggagcgggagtaccggcggacggtgctgcagctcgccaaggactatgagaag
gtgagggacgcagagaacgtgcagcgctacgtcatgccggaggagggcgccagcgtggat
gattcctacgtggaggtggacgagagggagaagaagcgcggctacgagcagcgcaagtgg
gaggaggaccagatgcgcggcacggcgctgtcctttggggcgcgggacaaggcgcagcac
cgccatgacaaggagtacaacctggtgctggaggatgagatcgagtttatcaagtcactg
ccgctcaagggaacccgcaagaagaccaaaaagaagaagaagaagaaggaagaggactcc
gactccagttcatcctcagatgatggggatgaggaagaggaggggggagaggaggaggag
gaggaggaggaggaggaggatatgatgaaagctccagacaacacaaagatgagcattcag
gaggtgagacgcagccttcctgtgttcccgttccgagactccctgctgggcgccatccgg
gaccaccaggtgctcatcgtggagggggagaccggctccggcaagaccacgcaaatccct
cagtacctgtacgaggccggctactgcgacgacggcaagaaggtcgggtgcacgcagccg
cggcgcgtggcagccatgagtgtggcgtcccgtgtggcacaggagatggacaagaagttg
ggcaatgaggtgggctacagcatcaggtttgaggactgcaccagtgagcggacgcgcatc
aagtacatgacggacggcatgctgatgagagagttcctggtggacccgagtctggagggc
tacagcgtcatcatcgtggacgaggcacatgagcgcacgctgcacactgacatcctgttc
ggcctgctcaaggacgtggcgcgcttcaggccggacctcaagctgcttgtgtccagtgcc
actctcgactcggaaaagttctctgatttcttcgacgaggcgccggtattccgcattcct
ggtcggcgctacccggtgcacatctactacacgcgcagccccgaggcaaactacatcgag
gcggcagccgtgacggtgttgcagatccacatcacgcagcgccttggtgacgtgctggtg
ttcctcaccggccaggaggagatcgaggcgtgccaggagatcctgacggagcgtgtcaag
gcactgggcagcaggatccgggagctcatcgtgttgcccatctatgccaacctgccctct
gagatgcaggccaagatctttgaggccacgccaccaggggccaggaaggtggtgctggcc
accaacattgctgagacctccctcaccatcgatggcatcgtgtacgtcattgacccgggc
tatgccaagcagaactatttcaacgcccgcagcggcatggaatccctggttgtggtgccc
atctcccgcgcctctgctaaccagcgggcgggccgtgccggccgggtggggccgggcaag
tgcttccgcctgtacaccaagtgggcctttgagaatgagatggaggaaaacacggtgcca
gagatccagcgcgtcaacctgggcaacgtggtgctgcagctcaagtcccttggcatcggc
gacctcatcaactttgactacctggacccgccgccagccgagacactgatcctggccatg
gagcagctgtatgccctcaaggcactcaaccacaagggggagctcaccctgacgggccgc
aagatggccgagctgccggttgaccccatgatggcccgcatgatcctggctgctggggag
tttggcgtggtggaggaggtgctcaccgtggctgccatgctgtccgtcaacggcgccatc
ttctaccggcccaaggacaaggccatccatgctgacacggcccgcaagaacttcttccac
ccagacggggaccacctcaccctgatgaatgtgtacagcgagtgggcgggcacagagtac
tcctcccagtggtgctacgaggtgttcgtgcagcaccgctccatgaagcgcgccagagac
atacgggaccagctggccggcctcatggagcgtgtcgagatccagctcacctccaacccc
gccgactccatggccatcaggaaggctgtcaccgctggctacttctaccacgtggcgcgc
ttcagcaagggtggcatgtacaagacggccaagaagggccagaccgtcatgatgcacccg
cagtcctgcctggcagaggacctgccacgctgggtggtgtaccacgagctggtgctcacc
accaaggagtacatgaggaacgtggtggtgatcgacggcaagtggctgctggaggtggcg
ccgcactactaccgggacagtgaggtgcaggacaccacctccaagaagatgcccaaggtg
aagggcaaggccaaggaggagctcaccaaggagtatgctgaccctgtcccttag
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