Scylla paramamosain (green mud crab): 135095576
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Entry
135095576 CDS
T11531
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03030
DNA replication
sprm03410
Base excision repair
sprm03420
Nucleotide excision repair
sprm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135095576
03410 Base excision repair
135095576
03420 Nucleotide excision repair
135095576
03430 Mismatch repair
135095576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprm03032
]
135095576
03036 Chromosome and associated proteins [BR:
sprm03036
]
135095576
03400 DNA repair and recombination proteins [BR:
sprm03400
]
135095576
DNA replication proteins [BR:
sprm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135095576
DNA Replication Termination Factors
ELG1-RFC complex
135095576
Chromosome and associated proteins [BR:
sprm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
135095576
DNA repair and recombination proteins [BR:
sprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135095576
Check point factors
HRAD17(Rad24)-RFC complex
135095576
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
AAA_lid_RFC1
Rad17
AAA_16
AAA_11
AAA_22
AAA_30
ResIII
AAA_24
AAA_19
Mg_chelatase
DUF815
RuvB_N
SLFN-g3_helicase
Gp44_lid
AAA_5
AAA_assoc_2
AAA_14
AAA_7
bpMoxR
AAA_28
AAA_18
AAA_3
Motif
Other DBs
NCBI-GeneID:
135095576
NCBI-ProteinID:
XP_063852548
LinkDB
All DBs
Position
49:2312313..2322094
Genome browser
AA seq
358 aa
AA seq
DB search
MHAFLKTGKLGAGAGGPSSGEGSKKAAVKKALVPWVEKYRPKTVEEVAYQEEVVAVLRKT
LEGADLPNLLFYGPPGTGKTSTILAAARQLFGDMFRQRVLELNASDERGIQVVREKIKRF
AQTTVSSTRPDGRPCPSFKIVILDEADSMTRPAQAALRRTMEVQSRSTRFCLVCNYVTRI
IEPLTSRCSKFRFRPLAQDVLEDRLTSICRSEGVKFEEGVVATVVETSGGDLRRAITSLQ
SSARLRGGDVVRVSDVLDVTGVVPDELITHLLDACSANSYEGVKERLSVLLAEGHAASQV
MSQLHDVVLANPHLSDLSKAAICEKLAVCEHRLLXGGDEFLQLLDLSCTAMQHLGRGA
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccttcctgaagaccggcaagctgggggcgggggcaggggggccaagcagcggt
gaggggagcaagaaggctgcggtgaagaaggcccttgtgccctgggtggagaagtaccgc
cccaagaccgtggaggaggtggcctaccaggaggaggtggtggcggtgttaaggaagact
cttgagggtgctgatcttcccaacctcctcttctacggacctcctggcaccggcaagacc
tccaccatcttggctgctgcgagacagctgtttggcgacatgttcaggcagagggtgctg
gagttgaatgcctcagacgagcgtggcatccaggtcgttagagagaagattaaacgattc
gcccagactaccgtgtcctctaccaggcctgatggccggccgtgcccctccttcaagata
gtgatccttgacgaggcggactccatgacgcggccggcccaggcagcgctgaggcggacc
atggaggtgcagtctcggtccaccaggttctgccttgtttgcaactacgtgacgcgaatt
attgagcctctgacgtcacggtgctccaagttcaggttccggccgttggcccaggatgtg
cttgaagatcgtttaaccagcatctgccgcagcgagggggtgaaatttgaagagggggtg
gtggcgacggtggtggagactagtgggggtgacctgcgccgcgccatcacctccctgcag
tcctccgccaggctccgaggcggtgatgtagtgcgggtgtctgatgttctggatgtaacg
ggtgtggtgccagacgagctgatcacacacctgctggacgcctgcagtgctaactcatac
gagggagtgaaggagcgcctgtctgtgctgctggctgagggtcacgccgccagccaggtg
atgagccagctgcatgacgtggtgctggccaacccacacctgtctgacctcagcaaggcg
gccatttgtgagaagctggcggtgtgtgagcatcggctgcggggcggtgacgagttcctg
cagctgcttgacctgtcctgcaccgccatgcagcacctgggccgcggcgcgtag
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