Scylla paramamosain (green mud crab): 135096477
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Entry
135096477 CDS
T11531
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03013
Nucleocytoplasmic transport
sprm03015
mRNA surveillance pathway
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135096477
09122 Translation
03013 Nucleocytoplasmic transport
135096477
03015 mRNA surveillance pathway
135096477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135096477
03041 Spliceosome [BR:
sprm03041
]
135096477
Enzymes [BR:
sprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135096477
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135096477
Spliceosome [BR:
sprm03041
]
Complex C
Other components
EJC/TREX
135096477
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135096477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135096477
NCBI-ProteinID:
XP_063854050
LinkDB
All DBs
Position
Unknown
AA seq
414 aa
AA seq
DB search
MRTAVDGGVAEAQEAAPPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQH
ECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMCHTRELAYQIAKEY
ERFSKYMPAVKVGVFFGGMNIQKDEDTLKNNCPHIVVGTPGRVLALVRNKKLSLRHLKHF
VLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDD
EAKLTLHGLQQHYVKIKENEKNKKLFELLDALEFNQVVIFVKSVQRCVALATLLVDMNFP
AIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH
RVARAGRFGTKGLAVTFVSEESDAKTLNEVQERFDVNITELPDEIDLSSYIEGR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaggacggcagtggacgggggggtggcggaggcccaggaggcagccccccccaagaag
gatgtgaagggaacttatgtatccattcactcttcagggttcagagacttccttctcaag
ccagagattttaagggccattgtcgattgtggctttgaacatccctctgaagtacaacac
gagtgcatcccacaagctgtattgggcatggacatcctgggacaggccaaatctgggatg
ggtaaaacagctgtctttgttctggccacactgcagcagattgatcctgtagatggccag
gtgtcagtactcgtcatgtgccacacgcgcgaactggcgtaccaaatcgccaaagaatat
gaaagatttagcaagtacatgccggctgtgaaagtaggtgtgttcttcggaggcatgaac
atacagaaggacgaggatacccttaagaacaactgcccccatattgtggtgggaacgcct
ggccgggtcctggctctcgtcaggaacaagaaactaagcttgcgtcacttgaagcatttt
gtgctggacgagtgcgacaagatgctggaacaacttgacatgaggagggacgtgcaagag
attttccgcaacacaccccacgaaaagcaagtgatgatgttttcggccactcttagcaag
gatattcggccggtctgcaaaaagtttatgcaagatccaatggaggtctatgtagatgac
gaggctaaactcaccctccatggtctccagcagcattacgtgaagattaaggagaacgag
aagaacaagaagctttttgaattgctggatgctcttgagttcaaccaggtcgtgatcttc
gtcaagtcagtgcagcggtgtgtggctctggcaacactgctagtggacatgaacttccca
gccattgctatccatcgcgccatgcagcaggaggagcgtctcagccgctaccaacagttc
aaggatttccagaagcgcattctggtggcaactaatctgttcgggagaggaatggacatc
gaaagggttaacattgtcttcaactatgacatgccggaggacagtgacacgtacctgcat
cgcgtggccagagctgggcggtttggtactaagggcctggcagtgaccttcgtgagcgag
gaaagcgatgcaaagaccctgaatgaggtacaggagaggtttgacgtcaacataacagaa
ctaccggatgaaattgacctctcctcgtacattgagggtcgttag
DBGET
integrated database retrieval system
