Scylla paramamosain (green mud crab): 135101251
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Entry
135101251 CDS
T11531
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135101251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135101251
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135101251
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135101251
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
135101251
NCBI-ProteinID:
XP_063861005
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All DBs
Position
6:5452720..5473251
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AA seq
473 aa
AA seq
DB search
MDRRGYNTRYPRPPLVGRGTASISHSAGNPRAGGGVRPGGGETLGSMGSLGGTVARSIES
RGIVSGPSVGNLVNSGGGSSGGHSLAALSSAVAATHNTNSLFMANSIQATAATQQRAVVN
EMLRHMQGLGNRGLSQFVGRPYGSGGGNSMMGLHSNFGGDSAPPPLDLSEFPSLSSRNTD
NSQPNPMAGRQPYVGMVKQPTPETSEFTMSSEDFPALPGSQANPTGKIFAPFSDDGFSNN
EKKSNSTSGTDTPSDLVLRAAEKNQSQKRGIQTSPDGKVTNIPGGMVTDQFGMVGLLTFI
RAAETDHNLVSLALGSDLTTLGLNLNSPENLYPNFAGPWAETPCRPQDIDYHVPQEYLTN
QQIRGKLAPVKFDRYGEDLLFYMFYSNAGDVLQILAAAELYNRDWRYHKEERVWITRAPG
MAPVDKGPNYERGTYFYFDAQNWRKVPKEFHLEYDKLEERPHIPTHTPTSSAL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtagaggttataatacccggtatccgaggcccccactggtgggccgtggcact
gcatcaatatctcactcagctggcaacccaagggctggtggtggtgtgaggcctggagga
ggagaaacgttaggtagtatggggagtttaggcggcactgttgctagaagcatcgagagt
cgcggtattgtgagtggccccagcgttggtaacctggtcaatagtggtggcggcagctca
ggtgggcacagcttggcagcgctgtcctcagcagtggcagcaacacacaacaccaactct
ttatttatggcaaacagcattcaggcgacggcggcgacgcagcagcgagctgttgtcaat
gaaatgctgcggcatatgcaaggtcttgggaaccgaggcttgagccagtttgttggccga
ccttatggaagtggaggaggaaatagtatgatggggcttcatagcaattttgggggtgac
tctgctcctcccccattagacctctcagaatttccctcgctctcttcaagaaacaccgat
aattctcagccaaacccaatggctggtagacaaccatatgtgggcatggtgaagcaaccc
acccctgaaacctctgagttcaccatgagcagtgaagacttcccagcgttaccaggctca
caggcgaaccccactggtaaaatcttcgcaccattttcagatgatggcttctccaataac
gaaaagaagtcaaattctacttcgggtactgatactccatctgacctggtgctgagggca
gcggaaaagaaccagtcacaaaaaagaggaatccaaacttctcctgatggtaaggtaacc
aacattcctggagggatggtgactgatcagtttggcatggtgggtcttctaacttttatc
agagcggcagaaacggaccacaatttggtctccttggcattaggttctgatctaacgact
ttaggtcttaacttgaattcacctgaaaacctttacccaaactttgctgggccttgggct
gaaactccctgcagaccccaagacattgactaccatgtaccccaggaatacctcaccaat
cagcaaataagagggaagttagcaccagtcaagtttgatagatatggtgaagatctattg
ttctatatgttctactcaaatgcaggagatgtgctacaaattcttgctgctgcagaactg
tacaacagggactggaggtaccacaaagaggagagagtgtggataaccagagcacctggc
atggccccagtagacaagggccctaactatgagcgaggaacctacttctattttgatgcc
cagaattggcggaaggttcccaaagagttccacctggagtacgacaaattggaggagagg
ccccacatccccacgcacaccccaacttcatctgccctgtga
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