Scylla paramamosain (green mud crab): 135105971
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Entry
135105971 CDS
T11531
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135105971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135105971
Enzymes [BR:
sprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135105971
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135105971
mRNA degradation factors
3'-5' decay
Ski complex
135105971
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
ATPase_2
Motif
Other DBs
NCBI-GeneID:
135105971
NCBI-ProteinID:
XP_063870777
LinkDB
All DBs
Position
12:26013598..26021052
Genome browser
AA seq
1209 aa
AA seq
DB search
MEVLSCLPPVLPRLQDQVEEYLLTPELLPIHSATNSRKWFPRVPEPHRLYSLCSLPASSR
LEVERDPATGEITGLREVASRDAGATSKNSLSLGRAPGPPEEVVRGSTTNYPFWPGGFPE
PEVDTEAVEAADIFDPENFLLSHPRLSGGMTFGKAEQVAEKDVAKEQEGQQEEGLVVNLA
DILNEQKIFEEEQQPAKPVGGSLSLEGLSQEDANLVQEFSIEPPPPPPRKQEFVLDTSST
TAAPVIAKNTEWAENVDINAPVDDFASRVPNPACSYPFELDTFQKQAVLHLEQQDCVFVA
AHTSAGKTVVAEYAVALSLKHMTRAVYTSPIKALSNQKYRDFKIKFEDVGLLTGDIQINP
KASCLIMTTEILQSMLYNGSDLIRDLEWVIFDEVHYINNAERGHVWEEVLIMLPATVSIV
LLSATVPNTIEFADWIGRIKKRKIYVISTSQRPVPLEHFLYTGTGGRSKDDRFLLVDARG
TFITKGYNDALAAKSDMKKSQQMQGGRHGRQHLGEKQEKNLWIGLLDHLVRRDLLPVVAF
TLSKKRCDSNAQLLLSQDLTTSREKGEIHAFIRRCTDRLQGSDKKLPQVLYMRTLLLQGI
GVHHSGILPILKEVVEMLFAKGLVKLLFATETFAMGVNMPARSVVFDSIRKHDGMAFRDL
VPSEYIQMAGRAGRRGLDTTGTVIVLCKTEVPEMADLHRMMLGKPSKLESQFKLTYSMML
RILRVESITVEDIMKRSFSEAVQMANQSKYKEELQQTKARLANEPDFSCLVCKDMKEYYA
AARDYTKQRRQVYASVMVFPGVMKAMAPGRLLLLSNGQYQQRLACLLKVDTRDQNKLTVF
VLKGKAETENPSQEEVQKKELLAASHDSFEVLEDTTGHTTLEVPPSSVAAILAKILKISA
DKVIDNIKKRQIPRFRDDPPSQSVQDLINHMQRLNVSRGEELPHFNLLMDLGVREMGAVA
QIRTLDTLRSKVRERACMECPMFQEHFEQAFVRLNLEEKAGRLTFLMSEEALQLHPEYKM
RTQVLRQMGYIEQNNTVTLKGRVACEMGSHELMVTELVMENVFGESPAEVIAALLSSMVF
QQRNCSDPSLTPELKKGVKQFKEVARNIGRVQKDCGLLEPVEDFVDQFNFGLTEVVYQWA
CGMPFNKIMELTDVQEGVTVKCIQRLDEVLKDVKNAAHIIGDPNLREKMEAASTAIKRDI
VFTPSLYTQ
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcctgagctgcctgccgcctgtgctgcctcgcctccaggatcaagtcgaggag
taccttctcacaccagagctcctgcccatccacagtgccaccaactcaagaaaatggttt
ccacgggtgccagagccacaccggctctacagtctgtgctcactgcctgcaagttcacgc
cttgaagtagagcgggaccctgccacaggggaaatcactggcctgcgtgaggtggctagc
cgagatgcaggggccacttccaagaactctctttccctgggcagggcaccaggaccacct
gaggaggtggtgcgaggctccaccaccaactaccccttctggcctggtggcttccctgag
cctgaggtggacactgaggcagtggaagcagcagacatttttgatccagagaatttcttg
cttagtcatccaaggctgtctggtggcatgacctttggcaaggctgaacaagtggcagag
aaggatgtggccaaggaacaggagggacagcaggaagaagggttggtagttaatttggct
gacatattaaatgagcagaagatctttgaagaagagcagcaaccagccaagcctgttggt
gggagtctgagcttggagggcttaagtcaagaggatgccaacttggtgcaggagttcagc
attgagcctccccctcctcctccccgcaagcaggagtttgttctggacacttccagcacc
actgctgctcctgttattgctaaaaacactgaatgggctgagaatgtggacatcaatgcc
cctgtggatgactttgcatctcgagtgcccaaccctgcctgtagttatccctttgagtta
gacaccttccaaaagcaggctgtcctgcatctagagcagcaagactgtgtctttgttgca
gcacacacttctgctggcaagactgttgtggcagagtatgcagtggccctgtcacttaaa
cacatgacacgagcagtctacacttctcccatcaaagccttgtccaaccagaagtaccgt
gacttcaagatcaagtttgaggatgtgggtcttctcacaggagacatccaaattaatccc
aaagcttcttgcctcatcatgactacagagatcttgcagtcaatgctgtataatggcagt
gacctgatccgtgatctagagtgggtcatctttgatgaggtacactacatcaacaatgct
gagcgaggtcatgtgtgggaagaggtgctcataatgctgccagccactgtcagcattgta
ctattatcagccactgttcccaacaccattgagtttgccgattggattggtcgcatcaag
aaacgcaaaatttatgtcatcagcacaagccagcgtccagtccccctggagcacttcctc
tatactggcactggtggacgctccaaggatgaccgcttcctgttggtggatgcaagaggc
acttttatcaccaaaggctacaatgatgcattagcagcaaaaagtgacatgaagaagagc
cagcagatgcagggaggtcgtcatggccgccaacaccttggggaaaagcaggaaaaaaat
ctttggatagggctgctggaccacctggtgcgtcgtgatctgttgccagtggtggccttc
actctctccaagaagcggtgtgacagcaatgctcaactgctgttgagccaggacctcacc
accagccgggagaaaggcgagatccatgccttcattcgtcgctgcactgatcgtctgcag
ggatcagataagaaactgccacaagtgctttacatgcgcacacttctcttacagggcatc
ggtgtgcatcacagtggtattctgcccattctgaaggaggtggtggaaatgctctttgcc
aagggcttggtgaaactgttgtttgccactgagacctttgccatgggtgtcaacatgcca
gctcgcagtgttgtttttgattccatcagaaagcatgatgggatggcctttagggatctg
gtgcccagcgaatacattcagatggcaggacgtgctggccgccgtggtctagacaccact
ggtacagtcatagtgttgtgcaagactgaggtgccagagatggctgacctgcaccgcatg
atgctgggcaaaccatccaagctggaatcccagttcaagttgacttactccatgatgcta
agaattctgcgtgtggagagcatcaccgttgaggacatcatgaaacgctccttctctgag
gctgtgcagatggccaaccagagtaaatataaggaagaattgcagcagacaaaggcccgg
ctggctaatgaacctgatttctcatgccttgtctgtaaagacatgaaggagtactatgct
gctgctcgggattacaccaagcagcgccggcaggtgtatgcttctgtgatggtcttccct
ggtgtgatgaaggccatggcaccaggccggcttctactgttgagcaatggccaataccag
cagcgcctagcttgccttctcaaagtagatacacgagaccaaaacaagctgactgtcttt
gttttaaagggtaaagcagaaacagagaacccttcacaagaagaggtccagaaaaaagaa
ctgttggctgccagccatgacagctttgaggtactggaggacaccacaggccacactacc
ttagaagttcccccaagtagtgtggctgcgatccttgctaaaatcctcaagattagtgct
gacaaagtcatagataatatcaagaagcgtcagattccacgcttcagagatgacccgccc
tctcagtcagtccaggatctgatcaatcacatgcagcgtctgaatgtgtctcgtggtgag
gagctgccccacttcaacctgctgatggacttgggtgtgagagagatgggggctgttgcc
cagatccgcacccttgatactttgcggtccaaggtgagggaaagagcatgcatggagtgc
cccatgtttcaggaacactttgaacaggcatttgtgcggctcaacttggaggagaaggca
ggacgcctcacattcctcatgtcagaggaggcactgcagctacatcctgagtacaagatg
agaacccaagtgttacgtcagatgggatacattgaacagaacaacactgtcactttgaag
ggacgtgtggcctgtgaaatgggtagccatgaactgatggtgacagagctggtaatggag
aatgtatttggagagagtcctgctgaagtgattgcagcactgctgtccagcatggtcttc
cagcagcgcaactgtagcgacccatctctcactccagagctgaagaagggtgttaagcaa
ttcaaggaagtggcacggaacattggcagagtccagaaggactgtggcttgctggagcct
gttgaggactttgtggaccaattcaattttggtctgacagaggtggtatatcagtgggcc
tgtgggatgcccttcaacaagatcatggagctaacagatgttcaggagggtgtcactgtc
aaatgcatccagcgtctggatgaagtgctcaaagacgttaagaatgctgcccatatcatc
ggtgatcccaacctgcgggagaagatggaggcggcctcaacagccattaagagagacatt
gtgtttacccctagcctgtacacacagtga
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