Scylla paramamosain (green mud crab): 135106289
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Entry
135106289 CDS
T11531
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm04382
Cornified envelope formation
sprm04512
ECM-receptor interaction
sprm04518
Integrin signaling
sprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135106289
04518 Integrin signaling
135106289
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135106289
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135106289
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sprm04147
]
135106289
00536 Glycosaminoglycan binding proteins [BR:
sprm00536
]
135106289
Exosome [BR:
sprm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135106289
Glycosaminoglycan binding proteins [BR:
sprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135106289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135106289
NCBI-ProteinID:
XP_063871222
LinkDB
All DBs
Position
13:1253510..1383481
Genome browser
AA seq
2182 aa
AA seq
DB search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NT seq
6549 nt
NT seq
+upstream
nt +downstream
nt
atgtttcttctgctcctcgccgttttccactcagcggcttcgcaggactggagtttatgg
ggaggtggcaccactgatgctccagctgaggtgccacaggctgcgctggaggatgtggca
catcggggcgacgcccaagtagaagataattacgatgattattatgatgtgaacgaagtt
gatagtgacaagacagatggtggatttggtctcagtgtcagtgccaaccttagtgctgat
gaaccatataacgccaggcgatattggtacaacagcacctatagctacggagaccgaact
ggtgacagcggccaagctagtcctagtgatagaagatattatcatagcaataggggagct
ggtagcaggtttgacgacagtgatggaggtgatagctataattccaatgatgacggaaga
tacagttctggaagcactcgtaattcaaccggctacagcacgtggtggacctacaataga
gaaggtgacagaggtgacagaagagatggtcaggatgaggatgatagactgactggaagc
gaagtacgaggagattttggaagaactggttctggtactggctacagaagtggaagttac
ggtggtggcgacagtggaggcgctggtggcggctacggtggaagtgatagctatggcggc
agtgaaggtgccggtggtggctacgatggcggcgacagctatggtggcagtggaggtgcc
ggtggtggctacggtggcggcgacagctatggcggcagtggaggcgctggtggtggctat
ggtggcggtgacggctatggcggcagtggaggcaccggtggtggctacggtggtggcgac
ggctatggtggcagtggaggcaccggtggtggctacggtggcggcgacggctatggtggc
agtggaggcaccggtggtggctacggtggaggcgacggctatggtggcagtggaggcacc
ggtggtggctacggtggcggtgacggctatggtggcagtggaggcaccggtggtagctac
ggtggcggtgacagctatggcggcagtggaggcgccggtggtggctacggtggcggtgac
agctatggcggcagtggaggcgccgatggtggttacggtggcggcgacagatatggcggc
agtggaggagctggtggtggctacggtggcggcgacagctatggtggcagtggaggcgct
ggtggtggttacggtggcggtgacggctatggcggcagtggaagcgctggtggtggttac
ggtggcggtgacggctatggtggcagtggaggcgctggtggtggctacggtgggggcgac
agctatggcggcagtggaggcgctggtggtggctacggtggcggcgacagctatggcggc
agtggaggcgctggtggtggctacggtggcggcgacagctatggcggcagtggaggagct
cgtgatggctatggctatggtgatgttagtggtctgaggccgcaggtgcagccccgacct
tcaggctaccctggttccggtgccgaactgcagcaggagtgtggaggcgaggactgcaac
acaggtggctgcaaatgtatcggagaaaagggctcaaggggagctccaggattgccaggc
cctactggagaaaagggacagcagggcttcccaggcatggagggactcatgggtcccaag
ggaagcaaaggagaacctggtccacaaggtcccactggccccaaaggagacagagggaag
atgggtctgaatggcttcccaggcatcaatggcattccaggcattccaggtgtgcaagga
cccagaggcagacctgggcttgacggctgcaatggcactgatggtgaaccaggggtgcct
ggccttcctggaccaccaggcccaagaggtttccgtggtccagagggtcagaagggcata
aagggagaacctgcaattgggccttgcacctccttcaagggagaaaagggtgagccaggc
cgtgatggtcggcaggggccacaggggccacctggtttgcctgggccccaaggagaggat
ggctacagaggaagagatggagagaagggtgaaaaaggatatgctggttccaagggagac
aaaggagcaatgggagtagccttcaagggacctccaggacaaaagggagagaagggagaa
aagggtgaagtgcaagattgccccataaagcctcagatatatccaaattgtactggaatt
gctctgctgggcaccaaaggagacaaaggtgccagaggtatgagaggacgtgatggcata
ccaggcatcaacggtatcaaaggtgacttggggaagaaaggtgctcctggagagaaaggt
ctacctggcctacctggtcctgctggacgtgaaggttttcctggtccacctggccccaat
ggttacaagggtgacctgggaccagctggccttgatggtttgccaggtctcaaaggagac
aaaggtgaagcaggatatcctggcagagatggtgagaaaggaaaccaaggtcctccagga
ccttccaagggtggcccacaaggtccacctggtcctaagggcttgactggcctgccaggt
cctcgaggcaaggatggtatagacgggcagccgggccgccgtggacctccaggtgtgcca
ggtggtcctggccaacctggaaaccctggaagggagggttctcctggcctcaagggagag
aagggtgtcagtggacgaccaggtgattcaggcccacaaggaccaccaggcctgccaggt
gagcgcggggaagctggccgtccaggacccaaaggaaacaagtgcttctccattgcaggg
gaaccaggagacccaggacaaccaggcatttccgggagggatggcatccctggaccccaa
ggacccatggggcttaggggcacacctggggacagcaaggatggcacccctggagaacct
ggagaaattggcgaccgtggtttacgtggcgtgccaggcatccctggccgggatggcata
ccaggtcgggctggaggtaaaggtgatgctggccaggactgtgagtgtggtgagtgtgag
aagggtgtgaagggtttcccaggacctcaaggcaatgcaggcattccaggagcacgcggt
ccaccaggacctattggctacccaggcgagagaggtgaagatggccaggtgggggtgcct
ggactgcctggcaaggagggtttagcaggccagccaggccttttaggtgccaaaggagaa
aagggtgattctgctgttgcctacccaggacctccaggtgaaaagggcgaaaagggtcga
ccagggtttcgaggtgaacctggagagaagggagagaaaggtttaagtggaagtaaaggt
cgtcagggccttcctggtttgtttgggcgcaaaggagagaaaggtttgagaggcttggat
ggaacaaaaggtgataggggtttcccaggaatctgtcagaaaggagatagaggatccgat
ggttatgacggtgacaagggccagaagggagaaagaggtcgacctggtgaaaatgccttg
gctagtcatttgtgtgataatgttactgctccagcaggagaaaagggagacccaggccct
caaggacctccaggagaaaaaggaattaggggccttagtggaatatatggtgagaagggt
gagccaggcaggccaggtcagccaggtgcaccaggtctgtcaggccgaagaggtgaaaag
ggatcagtgggtccaccaggtgtccctggggataaaggtgaacgaggacttccaggcctg
ggtggcagaaatggagccaaaggcagcaaaggtgatgagggacggccaggtgtgggtcgg
cccggagtttcaggcatcccaggtatcaaaggagaacaaggcctaccaggattgcccggc
aaaaatggttcccctggtgcaccaggcccacagggaccacctggtatcaagggagagaag
ggaataccaggtcttcatggtctggttggtatgaagggtgacaaaggtgacatgggacct
ccaggattgattggccagactggacctcgtggtctccctggcatggatggacagaaaggt
attgatgggataccaggaccaccgggacgcaatggtatggttggtttgcctggcatcaag
ggtgacaggggactagcaggtcctgctggccccaaaggatcatctggagcccccggacag
ccaggtttgcctggacggccaggcaatgatggccggccaggcccaccaggaccaaaggga
gaaatgggtattatgggcttcccaggcaacccaggccttgctggtcgtcctggtctccca
ggacagattggacaaaaaggtgaaagaggtattgaaggacttcgaggggatgtcggtgtt
cctggcagggaaggacctagaggagacaagggtgaacgaggactaatgggccaaccgggt
attgctggaatatcatcagagaagggagagaaaggcaacattggtcctccaggacgacct
ggattgcttggccagcctgggaaacctggacctcagggtctacctggacctaagggtcgt
gatggatttggtcctccaggtcttccaggagaacaaggccctccaggacttcctggtctg
gatggtttaaatggaaaccaaggtttgccaggcaatgatggccttccaggacgtaaagga
gacaaggggctgcctggcttccctgggactgctggagaggcctgtaaccttgttgttggt
ccaaagggtaacaagggagaatcaggttttgatggcataagaggagagaagggcaacgct
ggagcacaaggtcccccaggattggatggactacctggcttgtctggagacaagggagtt
attgggctgcgtggtttgcctggtataccgggtcagaaaggcagcaaaggtgatcctggc
ccagctggccgacaaggaccagaaggactccgtggtcttgatggtcttactggtgtgcaa
ggtcctaagggtgatcctggtcttcctggagcacctggaaaccctggcattgatggtctt
agaggggagaagggtaatgcaggaccttggggacccaaaggacaaaaaggaagaaccatc
aagggtgaaaagggccttcctggtgatgctggaaaacctggaacagatggagtacctgga
gaaaagggttctaagggtgaaatgggactcccgggattgcctggacagagaggttacaaa
ggagatgcaggtctggcaggatttgatggggcaaagggtgaacaggggcctcctggccct
gctggagtaccaggacgagatggtagacctggtttaccaggtgagaaaggtttggcagga
cctccaggagacagaggcctcccaggccagcctggtttacttggtcctaagggaccaaag
ggtgacataggtctgcaaggtcttccaggtcagccctgtctaccaggacccaagggagag
agaggcatcaatggtttgccaggtcgtgcaggagaaaaaggagtccagggagccaagggc
ttcaatggtttgccaggtactgccggccgacctgggctaccaggaacaaagggggagaga
ggcctccctggccttgaaggtcgtaatggaattcctggaataaagggccagcgaggccca
cctggccctcctggacccatggggcctatgggtccagcaggtagtccaggtatgcctggc
atgcctggtgccaaaggagaccgtggtcctgatggactgccaggagtaatgggtcctcag
ggtatgaagggagacagaggctttgcaggaacaccaggactccagggcgctatagggctg
caaggaaacaagggtgaggctggaaggagctgtaccgagcagcacccttactactcgggc
acacttgtggtgaggcactcgcagaccacctatgtgccacagtgtgaggctggacaattc
aagctgtgggatggcttctccttgctttatgtagaagggaatgaaaaagctcatcatcaa
gatctaggtttggcaggttcatgtgtgagaagattcagcacaatgccattcatgttctgt
gatttcaataatgtgtgcaattatgcctcaagaaatgacaagtcctattggttgtctact
aatgaaccaattcccatgatgcctgtttctgacacagccattcgaccatacatatcaaga
tgtgtggtgtgtgaggcaccatccaatgttatagctgtccacagccagtctctctcagtg
cccgactgcccacagggatggagcagcatgtggattggctactcctttgttatgcacact
gcagcaggtgctgaaggtggtggacagtctctcagtagcccaggatcatgtcttgaagac
ttccgtgctacaccattcattgaatgcaatggagccagaggaacatgtcactactttgcc
aacaagttcagcttctggcttgccacaattgaagatagaaatcagttctcaaggccagtg
tcagaaactctaaaggctggaagtcttttgacaagagtttcaagatgccaagtttgcatg
aagaactag
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