Scylla paramamosain (green mud crab): 135107499
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Entry
135107499 CDS
T11531
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03030
DNA replication
sprm03420
Nucleotide excision repair
sprm03430
Mismatch repair
sprm03440
Homologous recombination
sprm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135107499
03420 Nucleotide excision repair
135107499
03430 Mismatch repair
135107499
03440 Homologous recombination
135107499
03460 Fanconi anemia pathway
135107499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sprm03000
]
135107499
03032 DNA replication proteins [BR:
sprm03032
]
135107499
03400 DNA repair and recombination proteins [BR:
sprm03400
]
135107499
Transcription factors [BR:
sprm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
135107499
DNA replication proteins [BR:
sprm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
135107499
DNA repair and recombination proteins [BR:
sprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
135107499
MMR (mismatch excision repair)
135107499
DSBR (double strand breaks repair)
HR (homologous recombination)
135107499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
GDH2_N
Motif
Other DBs
NCBI-GeneID:
135107499
NCBI-ProteinID:
XP_063873515
LinkDB
All DBs
Position
15:14822475..14853991
Genome browser
AA seq
635 aa
AA seq
DB search
MLHGCDVSLHTGLWRSSGALSQRCPCKCPDGTPSTSCCSNIVDGGHPEKPVVQILTMKRI
PNSSQERWRLLLSDGKWSNSFAMLATQLNPKVDSGDITNNSIIRMDRYVCNTVQENKKVL
IILDLSVIMTGAEVGKKIGTPVTYDSSKIAAQQQEQPQQQYKAPASKVAPNMSSAGGNVA
RIPLAQHNAPAKGPCVTKTPSGGNVHPIESLTPYQNRWTICARVTNKSGIRTWSNSRGEG
KLFSMDLLDETGEIRATAFNNEVDKFYDMIEVDKVYFISSATLKTANKQYSNLNNEYEMS
FNRTTEVTPCHEQTAIPTMQFNFVSLDQLESLQKDAILDVIGVCKETHDLSHVIMKSTGK
ELTKRDIQIVDTTAREVRLTLWGTQAETFDGSQQPVVAVKGAKLSDFNGCSLSVLSSSCL
QINPDIQEAHMLKGWFDNGGNVAETVNLSGKGGLAGSVGGTFKLIAEAKQNTGTDQPEYC
CAKGCIVMVRKENSMYTACPRDGCNKKVVDQGNGMYRCEKCDQTYDTFQWRIMLQACVAD
ISDSQWISIFQDQAEQLLNTNANELGALRETNKDDFEKIMDGILFKNYNFKLRCKIETYN
GENRWKASVMNLNPVDPQEHSQRLITEIKQLTGQA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgttacacgggtgtgacgtttccctccacactgggctatggagaagtagcggcgccctc
agccagagatgcccttgtaaatgccctgatgggacacctagcacctcgtgttgttccaat
attgtggatgggggacatccagaaaaacctgttgtccagattttgacaatgaagcggatt
cccaatagttctcaagagcggtggcgtctcctcctctctgatgggaaatggtccaacagt
tttgctatgttggccacacagctgaacccaaaagtagactcgggcgacatcacaaacaac
tccattatccgtatggacagatatgtgtgcaacactgttcaggagaataagaaggtattg
attatccttgatctcagtgtgatcatgacaggtgcagaagttggaaagaaaataggcact
cctgtcacctatgattccagtaagattgctgcacaacaacaggaacaaccacagcaacag
tacaaagctccagcatccaaagttgcaccaaacatgtcatctgcagggggaaatgtggca
cgcattcctcttgcccagcacaatgcacctgccaagggaccatgtgtgacaaagactcca
tcaggtggcaatgttcatcctattgaatccctcactccataccaaaataggtggacaatc
tgtgctcgtgtcaccaacaagtccggcatccgtacatggtctaactcaaggggagaagga
aagctcttttcaatggatcttctggatgagacaggagagattcgggccactgccttcaat
aatgaagtggacaaattttatgatatgatagaggttgataaagtgtacttcatctcctct
gccaccctcaagactgccaataaacagtattccaacctcaacaatgaatatgaaatgtca
ttcaataggacaactgaggtcacaccatgtcatgaacaaactgccatcccaacaatgcag
ttcaactttgtgtccctagatcagctggaatctctccaaaaggatgccatcttggatgtc
attggggtttgtaaggagacacatgatctgtctcatgtcatcatgaaatcaacaggcaag
gagctaactaaacgggatattcaaatagtggatactactgcaagagaggttcgccttaca
ttatggggaactcaagcagagacatttgatggatcacagcaaccagttgtggcagtgaaa
ggagccaagctgtcagacttcaatggatgctccctgtccgttctcagttcatcctgctta
cagataaaccctgacattcaagaggctcacatgttgaagggatggttcgataatggtggc
aacgtagcagagactgtcaacctttcaggaaaaggtggtctagctggcagtgttggaggt
accttcaagctaattgctgaagcaaagcagaacacaggaactgaccaaccagaatattgc
tgtgccaaaggatgtattgtgatggttcgaaaagaaaacagtatgtacacagcctgtccc
agggatggatgcaataagaaggttgtggatcagggcaacgggatgtatagatgtgaaaaa
tgtgaccagacatatgacacatttcagtggcgcattatgcttcaggcatgtgtggctgac
atttcagacagccagtggatcagcatattccaggatcaggcagagcaactgcttaataca
aatgcaaatgagctgggtgccttgagagaaacaaacaaagatgactttgagaaaataatg
gatggcatccttttcaagaactacaacttcaaattgaggtgcaaaatagagacatacaat
ggagaaaacagatggaaagcttcagtcatgaatctcaatcctgtggatccccaagagcac
agccagcgattgatcacagagatcaaacagttaactgggcaagcctga
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