Scylla paramamosain (green mud crab): 135107642
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Entry
135107642 CDS
T11531
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03013
Nucleocytoplasmic transport
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135107642
09122 Translation
03013 Nucleocytoplasmic transport
135107642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135107642
03041 Spliceosome [BR:
sprm03041
]
135107642
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
135107642
Spliceosome [BR:
sprm03041
]
Complex C
Other components
EJC/TREX
135107642
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135107642
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
135107642
NCBI-ProteinID:
XP_063873783
LinkDB
All DBs
Position
15:complement(21357688..21369349)
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AA seq
705 aa
AA seq
DB search
MVISSIMSPTMADSSLTFQRIFTKVQSTLPQCIENVDALPVTTIFSTKISETTKHCIEAA
VRSYVTRRVIDGDKTNLSTITAITTVCIDLVRHELSLPTLPVLVLSDAFDTLTIRQGEEL
FSFVESHVSVWKEDTFFAPCKTSVLRMCNDLLRRLSRSQNTVFCGRILLFLARFFPFSER
SGLNLVSEFNLENVTTFTNVEASEMEEEDEEDKGGTAPRLDYTLYTKFWSLQDFFRNPGQ
CFQKAPWKVFTLYCGDVLEAFRSFKLDHLHSSSGAGARLSRSLSEPAPDQEGSNSLISQH
QVDEYFAKYLTNQKLLDLQFSDTNFRRYVLLQVLILTQYLTSNIKFKQETLTEDQLAWVR
KTEKLVYSLLEETPPDGPKFVSTVRHILKREEMWSNWKNDGCPEFKKPEGQDRAKGSGST
SGKQNGKSEEVGKEEEAPRSPRKVRQKRRIGDLIKDADSKGKFTMGNAEMSRLWNLHPNN
LEACKIPERDFVPALESYFTPAIEQLSPRSELKEEQKLVNDSNFGWRALRLLACRSPHFF
TNSASPIAKLPEYLNTMIKKLAKELPSQLVADIKVEEEEEKEEEKVIPVLEQGDGVKVEE
DMEEETGEVEERPEVRAITEEEQEALAQRLDALGQDKWKVLAKKLGFEADEIEYIEKTMS
DGVAQQAAYMLKLWVEGEGDEANKESLLYTLEGLKMQDAAQGVFT
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggtcatcagcagcatcatgtcacccaccatggcggattccagtttaacttttcagagg
atatttactaaggttcagtccactctacctcagtgcatcgagaatgtggacgcgctgcct
gttacaaccatcttctccaccaaaatcagtgagaccacaaagcactgcattgaggctgct
gttcggagctacgtgacacggagggtgattgatggggacaagacaaatttgtctaccatc
actgccatcaccacagtgtgcattgaccttgtgagacatgaactgagtctgccaacactg
ccagtgttagtgttgagtgatgcatttgacacactaaccatacgccagggggaggaactc
ttttcctttgttgaaagtcacgtcagtgtgtggaaagaagacaccttcttcgcaccctgc
aagacaagtgttctgcgaatgtgcaatgacttgttgcgtcgtctgtctcggtctcagaat
actgtattctgtggtcgcattttgttgttcctcgcccggtttttcccattctcagagcgt
tcaggacttaatctagtctcggaattcaacctcgagaatgtgacaacttttaccaatgtg
gaggcatcagagatggaagaggaagatgaagaggacaaagggggcactgcaccacgcttg
gactacactctatacactaaattttggtcactccaggatttcttcaggaaccctggacaa
tgctttcagaaagccccctggaaagtcttcaccttgtactgtggagatgtgctggaggcc
ttcaggagcttcaaattggatcacttgcacagcagcagtggtgcaggtgccagactgtca
cgttccctgtcagaacctgccccagatcaggagggcagtaattccctcatctcacagcac
caggtggacgaatactttgccaaatatctcaccaaccagaagctactggaccttcagttc
tcagacaccaatttccggcgatatgtgctgctgcaggtgctaatcctcacccagtacctc
acctccaacatcaagttcaagcaggaaaccctgacagaggaccagctggcctgggtgaga
aaaacagaaaagcttgtttactctctgcttgaggaaactccaccagatggacccaaattt
gtctccactgtcagacacattctcaagagggaggagatgtggagtaactggaagaatgac
ggctgtccagagttcaagaagcctgaagggcaggaccgtgcaaagggtagtggcagcacc
agtgggaagcagaatggcaagagtgaggaggtgggaaaagaggaagaagcaccacgctct
ccccgtaaagtgcggcagaagcggaggataggtgatttaatcaaggatgcagattccaag
ggaaaattcaccatgggcaacgctgagatgagtcggttgtggaatcttcatcccaataac
cttgaggcatgcaagatacctgagcgtgactttgtccctgcccttgagtcatacttcact
ccagccattgaacagctcagtccaagatccgagttgaaagaggaacagaagttagttaat
gacagcaattttggctggcgggctttgcgtcttctggcttgccgctcaccacacttcttc
accaactcagccagtcccattgcaaagctgccagaatatctcaacaccatgatcaagaag
ctagccaaggagttaccgtctcagctggtggcagatatcaaggtggaagaggaggaagag
aaggaagaggaaaaggtcattccagtgctggagcagggtgatggggtcaaagtggaagag
gacatggaagaagagacaggagaggtggaggagcggccagaagtgcgggccatcactgag
gaggagcaggaagcccttgcccagcgtcttgatgctcttggtcaagataagtggaaagta
ctggccaagaagcttggatttgaggctgatgagattgaatatattgaaaaaaccatgtca
gatggtgtagcacagcaggcagcctatatgctcaagctgtgggtggaaggtgagggagac
gaggccaacaaagagtcactattgtacacacttgaaggactcaagatgcaagatgcagct
cagggagtttttacctaa
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