Scylla paramamosain (green mud crab): 135110275
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Entry
135110275 CDS
T11531
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sprm
Scylla paramamosain (green mud crab)
Pathway
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135110275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sprm03041
]
135110275
Enzymes [BR:
sprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135110275
Spliceosome [BR:
sprm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135110275
Complex B
135110275
Complex C
U2 SnRNP specific factors
135110275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
135110275
NCBI-ProteinID:
XP_063878498
LinkDB
All DBs
Position
20:complement(9892454..9901276)
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AA seq
651 aa
AA seq
DB search
MSYNRGRGFGFGGFSFAKKQEAIPPPPNAALSKHGYHTMTAISQNAISGGCGYGQPRKRP
RDEDEYFDDEDESFEGAYQPAPGSPGPQRKESSDSDEDPLDAFMAGIEQEVKRTKVKGSE
DKKEMKGVRDDIDEEDDEESYYRYIQENPNAGRQQEDSEDEIEYDEDGNPIAPKKPKYID
PLPPIDHSTIQYAEFTKNFYQEHEDIAALGPGQMHELRTKLGIKVTGFDAPKPVTSFGHF
GFDEALMKSIRKSEYTQPTPIQAQAVPIALSGRDAIGIAKTGSGKTAAFIWPMLVHIMDQ
RELSPGEGPIGLILAPTRELAQQIYTEARRFGKVYNIQVVCAYGGGSKWEQSKGLEAGAE
IVVATPGRMIDMIKMKATNLQRVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLLFS
ATFKRKVERLARDVLTDPVRVVQGELGEANQDVTQIIKLLNSSNHKWLWLTKHLVEFMSE
GSVLIFVTKKANAEELCNSLTTKEYDALLLHGDMSQYERNEVITGFKRKDKPILVATDVA
ARGLDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTDKDKEFAGHLVRNLE
GAAQEVPKELMELAMQSSWFRKSRFKQGKAKALGGRGLGFRERARPGLKSC
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgagttataacaggggtcgtgggtttggctttggggggttctcctttgccaagaaacag
gaggccatcccaccgccacccaatgccgcactcagcaaacacggctaccacaccatgacc
gccatcagccagaatgcaatatcaggtggctgtgggtacggacagccacgcaagagacca
agagatgaggacgagtactttgacgatgaggacgagagctttgagggagcatatcagcca
gcgccgggcagccccggaccacagcgcaaggaatcctcagactcagatgaggatccgctg
gatgccttcatggctggcattgaacaggaggtgaagaggacgaaggtgaagggcagtgag
gacaagaaggagatgaagggtgtgcgtgacgacatagacgaagaggatgatgaggagtcc
tactacagatacatccaggagaaccccaatgctggcaggcaacaggaagacagtgaggat
gagatagagtacgatgaggacggcaaccccatcgcccccaaaaagcccaaatatattgac
ccccttccccccatcgaccactccaccatccagtatgctgagttcaccaaaaacttctac
caggaacacgaggacattgcagctcttggccctggccagatgcacgagctgcggaccaag
ctgggcatcaaggtcactggctttgatgcgcccaagccagtcacaagttttggccacttt
ggctttgacgaagcgctgatgaagtccatccgcaagtctgagtacacgcagcccaccccc
atccaggctcaggctgtgcccattgccctgagtggccgcgatgccatcgggattgccaag
accggcagtggcaagacggcagctttcatctggcccatgctggttcacatcatggaccag
agagaactgtctcccggcgagggccccattggcctcatcctggcacccacgcgtgagttg
gcgcagcagatatacacagaggcacgcaggttcggcaaggtgtacaacatccaggttgtg
tgtgcctatggtggtggcagcaagtgggagcagagcaaggggctggaggcaggggcagag
attgtcgtggccacacccggccggatgattgacatgatcaagatgaaggcaaccaacctg
cagcgtgtcaccttcctggtgctggacgaggcagaccgtatgtttgacatgggatttgag
cctcaggtgcggtcaatatgtgatcatgtgaggccggaccgacagacactgctcttctct
gccaccttcaagcgcaaggtggagaggctggcgcgtgatgtactgacggatccagtgagg
gtggtgcagggtgagctgggtgaggcaaaccaggatgtgacacagatcatcaagctgctc
aactccagcaaccacaagtggctctggttgacgaaacaccttgtggagttcatgtcggag
ggcagcgttctcatcttcgtcaccaagaaggccaacgcggaggagctatgcaacagcctc
accaccaaggagtatgacgcgctgctcctgcacggcgacatgagccagtacgagcgaaac
gaggtcatcacggggttcaagaggaaggacaagcccatcctggtagccacagacgtcgcc
gcacgtggtctggacatcccacacatccgcactgttgtgaactacgatgtggcgagggac
attgacactcacacccatcgtattggtcgaacaggccgtgctggggagaagggcacagcg
tacacccttgtgacagacaaggacaaggagtttgctggccatctggtgaggaacctggag
ggggcggcacaggaggtccccaaggagttaatggagctggccatgcagagctcctggttc
cgcaagtccaggttcaagcagggcaaggcgaaggcactcgggggacgtggccttggcttc
agggagcgggccaggcctgggctcaaatcctgttag
DBGET
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