Scylla paramamosain (green mud crab): 135110357
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Entry
135110357 CDS
T11531
Name
(RefSeq) nucleoporin NUP188-like isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135110357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprm03019
]
135110357
Messenger RNA biogenesis [BR:
sprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135110357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Vel1p
DUF1103
Motif
Other DBs
NCBI-GeneID:
135110357
NCBI-ProteinID:
XP_063878681
LinkDB
All DBs
Position
20:13114098..13134814
Genome browser
AA seq
1890 aa
AA seq
DB search
MKDVCLVSGKALWGVICGTYVLPSDEVVGNELQKAAPHLRAGLRAYAKPTGDHLDRWIME
EKKVILKKLFDLMVSESDDHWAKTASITEKKKNFVKELSELLVIESECKGDDHWGKTANI
TEEKKDLVKKLSYLLVSESGWEGCKHSAKTANIMEKNFSKKFELLGSKSKCEGDEKVVEK
KKKFVKKLFDLVSESEWKGDDHWGKTANVTEKKNNFVKKLSDLVSESEWKGDSHLSKTGN
VTEMKNLFMKLADLVVNESKCEGDDRWAKTASVIGLAMKLSNLLVKESEWKGDDHWGKTA
IVMEEKKNFVKKLSNLLDLAAVQSWEVFQFFLVNEYTKADSSLPDLFTSQRDEESFRAHL
LRFYLGDRLHLLRCLRHIVANTANPQHPYQSLFSDFMRDVLDKDGMLEGCLLQQVINNNN
GSNGSTSVAASSMPPDGPIPGPSTHLAHHLAELQEILATLLVYYSSTGRSPLPATFKSLV
QLAQGGGLGGQPDLQEGLREIHMPLVEALDATHALLLVLTINVDMPTSGHSLCESEWVNK
LDPIMAGLGARKPHLAPLLAWAVLHLRAAADRASTSTSSAYAASTRTYHRLAERALSSNV
FSYLQTALSCAPIQGDKLLLRLASSVVYSLVCATATCLPLAPAHQPVLSSLAKTLLAQDP
PADLFWAEEDGGAGLLLPHALEVFPYEVEPLLSLATALAGANPDSCLKVIELLSEVPYLT
WPLELGECPVQQVREGGYCTMAPLQLLPSITVPARTCGSLVPASLRLVAWNTPTNAWQVL
LSIMNMLGLEVSSGATVADPQVMKAVCSTLQLVTAVLATLPSQLPALVHVVHEALVLLRR
MSHVSRPPGVLVAALLAMLAEVSTQEAKNVWTELEGSPLLPYLALPESSASEAKRGKADP
FVEYRAGGLRALVCGEEAAMGTYPILRSYTSLLAAAIKGGVRTGSVQGGVVFMAREVTGA
MMRWWYRTQEERDKLFECCLTLLHHTLEDPGLDPSVHTLVVHQLVDRSSAGRTLLSVVES
GASLEGMLSLPSHSPASTQALRLTRTAQMALSILHRLVGEESSTEGLSQLLRATPLPGVP
LGSSPGVGRGQGSSAVPHLALTVALYAHQRLNPRLLYLALRTLTRFAQKLDVPLVACFGA
EADGIRDALLRRLESPTEDVRVKVALLRLLTASTTRQQGLTNAFLTPPEKLLDPLVSLAS
LTGKGSMGHEVVLAVVELVDALWTQKYSTATRHMQAKKEFCDALTCPLTSHKPGEVSDAI
VGHCFSILARQLFCANSSPPASLSAVKDRLFSSGSRSSVCLWSEHVLSKVEDGWKESRDV
REVLVPAWRDFVVVLVMRARSWLTPQLKVKLAEDILEGLLRQVGSSEEPDQHLTLLLAEV
YIALVKHCSKQLAEKQKFFEQTSKLLACLQGVVMTTSTHCQLLILGASLSLITLTDITPQ
SHNLVACLVGPVGNLVQQHGRLAGSAAQSCTSASTLGLATALLHQLLLRCQPDTAQQLLT
QFPVVPALLHATETYMKSGDEEVVGEMVNLLATLCRTAQPWKEVSAQTLSSTLTLAVPSS
KTNLLSGVVWCMVWGVRHMGAMGVEGGVNVAAIHLQALCGSLAIPHKEPNLALASAALVE
ALAPHTGLWVVLHQASFTQLTAATTRCIHITKHLLCTPRFVQRELGGESGSRSGGASAAA
ATTTASAISDAAAAITPATTAALNKMLHVLCACLSAIQSLGPDLTDLLCGPGSDVDAWTL
FFHPSFRTVSAHDPSAQPSLASLTAVLELYDSHASKESRGVSPCHSGAPEVGLSLQVLAL
CAEKALLLLLTQATLALMSPDTAPRDAQRIRQNMADDMNSFFHHSLGRRPPASPLPTTMA
GASTAGGHTHISLRYLRLAQQLVTRLCVTK
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacgtgtgcctcgtcagcggcaaggcactatggggcgtgatctgtgggacgtat
gtgttgccatcagacgaggtggtggggaacgaactgcagaaggccgccccacatctgcgt
gccggcctgagggcgtatgccaagcccacgggagaccacttagaccgctggatcatggag
gagaagaaggtgattctcaagaagttgtttgacctcatggtgagtgaaagtgatgaccac
tgggccaagactgccagcatcacggagaagaagaagaattttgtcaaggagttgtctgag
ctcctggtgattgaaagtgaatgtaaaggtgatgaccactggggcaagactgccaacatc
acggaggagaagaaggatcttgtcaagaagttgtcctacctcttggtgagtgaaagtgga
tgggaaggttgcaaacactctgccaagactgccaacatcatggagaagaatttttccaag
aagttcgagctgctggggagtaaaagtaaatgtgaaggtgacgagaaggtcgtggagaag
aagaagaaatttgtcaaaaagttgtttgacctggtgagtgaaagtgaatggaaaggagat
gaccactggggcaagacagccaacgtcacagaaaagaagaataattttgtcaagaagttg
tcagacctggtgagtgaaagtgagtggaaaggcgacagccacttgtccaagacaggcaat
gtcacggagatgaagaatcttttcatgaagttggccgacctcgtggtgaatgaaagtaaa
tgtgaaggtgacgaccgctgggccaagactgccagcgtcattggtcttgccatgaagttg
tccaacctcctggtgaaggaaagtgaatggaaaggtgatgaccactggggcaagactgcc
atcgtcatggaggagaagaagaattttgtcaagaagttgtccaacctcctggacttggca
gcagttcaaagctgggaggtgtttcagttcttcctggtgaatgagtacaccaaggcagac
tcctccctgcctgacctcttcactagccagcgtgacgaggagtccttcagggcacacctc
ctccgcttctaccttggggaccgcctccatctcctccgctgtctgaggcacattgtagcc
aacactgccaatccacaacacccataccagagtctgttcagtgactttatgcgtgatgtg
cttgacaaggacggcatgctggagggctgcctcttgcagcaggtgatcaataacaacaat
ggcagcaatggcagcaccagtgtggcagcctccagcatgcccccagatggcccaatccct
ggcccatccacccacctggcccaccacctggctgagctgcaggagattctggccaccttg
cttgtctactacagcagcactggcagatctccattaccggccaccttcaagagtttggtg
cagttagcccagggtggtggtctgggtggacagcctgatctgcaggaggggctgagggaa
atccacatgcccctggtggaggccctggatgccacacatgccctcctgcttgtcctcacc
atcaatgttgacatgcccaccagtggccacagtttgtgtgagagtgagtgggtgaataag
ctggaccccatcatggctggcttgggggcacgcaaaccccacctggctcccctcctagcc
tgggcagtactccacttacgtgctgcagctgaccgggcttccacttccacctcctctgcc
tatgctgcttccactaggacctaccataggctggctgagagggccctgagtagcaacgtg
tttagctacctgcagactgccctcagctgtgctcccatacagggtgacaagctgctactg
cgcctggcctcctcagtggtgtactccctagtgtgtgccacggccacttgcctccccctg
gccccagcacaccaacctgtcctgagctcactggccaagactctccttgcccaggaccca
ccagctgacctcttctgggctgaggaagatggaggtgccggcctgctgttgccacacgcc
ctggaggtgtttccatatgaggtggagcctctgctgtccctcgctactgctcttgctggt
gccaacccagacagctgcctcaaggtgatagagctgctgagtgaagtgccatacctcacc
tggcccctggagcttggggagtgcccagtgcaacaggtgagggaaggaggctactgcacc
atggcacccctccagctgctgccatccatcacagtgccagcacgcacctgtggctctctg
gtgccggccagcctgcggctggtggcctggaacactcccaccaatgcctggcaggtgctg
ctgtccatcatgaacatgctggggctggaggtgagcagcggagcaacagtggccgaccct
caggtgatgaaggccgtgtgctccacccttcagctggtgacagctgtgctggccaccctg
ccctcccagctgccagcactggtccatgtggtgcatgaggcactggtcttactgcgcagg
atgtcccatgtgtcccgccctcctggagtactcgtggcagctcttctggccatgctggca
gaggtgtccactcaggaggccaagaatgtgtggactgagctggaggggagtcctctgttg
ccatacctggccctcccagagagttcagcatcggaggccaagagggggaaggctgacccc
tttgttgagtaccgtgctgggggactgcgggcattggtgtgtggggaggaggcagcaatg
ggcacctaccccattttgcgctcctatactagcttgcttgctgctgctatcaagggtgga
gtgcgcacaggcagcgtgcagggcggtgtggtgttcatggcaagggaggtgacgggagca
atgatgcgctggtggtacaggacacaggaggagagggacaagctgtttgagtgttgcctc
accctgctgcatcacactctggaggaccctgggctagacccaagtgtccacaccttagtg
gttcatcagctggtggacaggagcagtgccggccgcaccctgctgtcggtggtggagagt
ggtgctagcctggaagggatgctcagcctgccctcccactccccagcctccacccaggcc
ctccgcctcacacgcaccgcccagatggctctctccattctccatcggttggttggagag
gagagcagcacagagggactgagccagctgctgcgagccactccccttcccggtgtgccc
ctcggcagctccccaggagtggggcggggccagggcagcagtgctgtgcctcacctggcc
ctcactgtggctctgtatgcacaccagcgcctcaaccctcgcctcctgtacctggccctg
cgcaccctcacacgctttgctcagaaactagatgtgcccctggtggcatgctttggtgct
gaggctgatggaatccgagacgctctgctgcggcgcctggagtccccaacagaggatgtc
agggtgaaggtggcactgctgcgtctgctaacagcctccaccactcggcagcagggcctt
accaatgccttcctcacaccgccagagaagctgcttgatcctctcgtctccctcgctagt
ctcactgggaagggcagcatgggccatgaggtggtgctagcggtggtggagttggtggat
gccctgtggacccaaaaatactccaccgccacgcgccacatgcaggccaagaaggagttc
tgtgatgccctcacctgccccctcacttcccacaagccaggtgaggtgagtgatgccatt
gtgggtcactgctttagcatcctggcacggcagctgttctgtgccaactcgtcaccgccg
gccagcctttccgcagtcaaggaccgtctcttcagctcaggctccaggtcttctgtctgc
ctgtggtctgagcatgtgttgtcgaaagtggaggatgggtggaaggagagccgggatgtg
cgggaggtattggtgccagcgtggagggactttgtggtggtgctggtgatgcgtgcccgg
tcctggctcaccccacagctaaaggtgaagctggctgaggatatcctggagggactgttg
cggcaggtgggcagcagtgaggagccagaccagcacctcacactgctactggctgaggtg
tacattgctctggtgaagcactgcagcaaacaactggcagagaagcagaaattctttgag
cagacgagcaaactgctggcatgtctgcaaggtgttgtgatgaccacctccacccactgc
cagctgctcatcctaggagcctctctctccctcatcaccctcactgacataacaccacag
tcacacaatctggtggcatgcctggtggggccagttggaaacctggtgcagcagcatggc
cggctggcaggctcagcagctcagagctgcacttcagcctccaccctgggcctagccaca
gctctcctgcaccagctactcctgcgctgccagccagacacagcacagcagcttctgact
cagtttcctgtagtgccggcactcctacatgctacagagacctacatgaagagtggagat
gaggaagtggtgggtgagatggtgaatctgctggccaccctctgccgcaccgcacagccc
tggaaagaggtgtctgcccaaactctttcctcaacacttaccttggctgtcccatcctcc
aagacaaacctactgagtggtgtagtatggtgcatggtgtggggggtgaggcacatgggg
gccatgggggtggagggaggtgtgaatgtggcagccatccatctccaagccctttgtggc
tccctagctatcccccacaaggagcccaacctggccctggcctcagcagccctggtggag
gccctggcccctcataccggcctgtgggtcgtgttgcatcaagcctcctttactcagctg
acagctgccaccacccgctgcatacacatcaccaaacacctgctctgcacgcctcggttt
gttcagagggagttgggtggagagagtggcagcaggagtggtggtgcctcagctgctgcc
gccaccaccactgcctctgccatcagtgatgctgctgctgccatcacaccagcaacaaca
gccgccctcaacaagatgctgcatgtgttgtgtgcctgcctcagtgctattcagtccctg
ggaccagacctaactgacctcctgtgtgggccaggctcagatgtggatgcttggacgctc
ttcttccacccatctttccgcactgtgtcagcacacgacccctcagcccaacccagcctg
gcctccctcactgctgtgctggaactttatgacagtcatgcatctaaggagagtcgtgga
gtatctccgtgccatagtggtgccccagaggttggtctcagtctgcaggtcttggccctt
tgtgctgaaaaggccctgctgctattgctgacacaagcaaccttggccctcatgagtcct
gacacagcaccacgtgatgcacaaaggatcagacagaacatggctgatgacatgaattca
ttcttccaccattcactgggacgcaggccacctgcctcccccctgcccaccaccatggct
ggagcctccactgccggaggccacacccacatcagcttacggtaccttcgtctcgctcag
cagttggtgactagactttgtgtcaccaaatga
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