Scylla paramamosain (green mud crab): 135110858
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Entry
135110858 CDS
T11531
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135110858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sprm03041
]
135110858
Enzymes [BR:
sprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135110858
Spliceosome [BR:
sprm03041
]
Complex C
Other components
Step II factors
135110858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
GIPC1_GH2
DEAD
AAA_22
AAA_19
PWI
nSTAND3
nSTAND_NTPase5
AAA_16
PhoH
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135110858
NCBI-ProteinID:
XP_063879539
LinkDB
All DBs
Position
21:2562440..>2666399
Genome browser
AA seq
1274 aa
AA seq
DB search
MDDLFKLEKLSLVSKICVELENHLGINDKDVAEFIISLAEANKRLDKFKKALEENGGDQF
ADSFVESLWRLIQHMMPSLTSSSTISIKEDDKPKTEKDKKREMLPFLALPNDPKVIHMLD
DELKPPVKVKEEISQKSKIKEKEREDEWNSHKWKKNEKELEKAELKREKITKKESETEMD
DLMAFLESHAPSKQTEKASNQAKERKRRLSRSHSRERRRSRSPRKHKRKRERSHSHGRER
RRSHSRERRSRSNSRERRDDGYEKRHGREKHGNRKDRHRRDRSRSLSKDGHRSRSQVRNS
HSTSSRDMFISRPPDENPVVGKVYEGKVTNILNFGCFVQLEGLRRRLEGLVHISQLRREG
RVTNVSDVVVRGQKVKVKVLSFTGQKTSLSMKDVNQETGEDLNPNVAPVGISNMEEDSMR
NPDRPMSLMELTKGTDEEDLATYKRVNRISSPERWELKQMMAANCISKSEMPDFDEEQGV
MGGEDDDEEDVEIELVEEEPAFLRGYGRVREELSPVRIMKNPDGSLAQAAMMQSALAKER
REVKMAQRESEMDSQPSNLGQNWNDPLPEIQRSDSAMSRGLTSQQQEVPEWKRHITGGTR
GSYGKKTNMTILEQRQSLPIYKLRDELIKAIDGNQILIVVGETGSGKTTQITQYLAEAGF
TAKGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSSETVIKYMTDGMLL
RECLIDPDMSSYACIMLDEAHERTIHTDVLFGLLKQAVAKRPELKLIVTSATLDAVKFSE
YFNQAPIFTIPGRTFPVEILYTREPETDYLDAALITVMQIHLSEPPGDILVFLTGQEEID
TACELLYERMKALGSDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLT
IDGIYYVVDPGFVKQKVYNPKTGMDSLMVTPVSQAGAKQRAGRAGRTGPGKTYRLYTERA
YRDEMLPTSVPDIQRTNLASTVLQLKAMGINDLLGFDFMDPPPTDAMVMALETLHSLSAL
DDEGLLTRLGRRMAEFPLEPNLAKMLIMSVHLQCSDEILTIVSMLSVQNVFYRPKEKQAL
ADQKKAKFNQAEGDHLTLLAVYNSWKNNKFSNAWCYENFVQMRTLKRAQDVRKQLLGIMD
RHKLDVVTCGKNVARAQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPE
WVVYHELVQTTKEYMREVTTIDPKWLVEFAPSFFKLGDPTKLSKYKKNQRLEPLYNKYEE
PNAWRISRVRRRRN
NT seq
3602 nt
NT seq
+upstream
nt +downstream
nt
atggatgatctttttaagcttgagaagctttccctggtctccaagatatgtgtggaactg
gaaaaccatttaggaatcaacgataaagatgttgctgagttcatcatttcccttgctgaa
gccaacaaacgccttgacaaattcaagaaagcacttgaagaaaatggaggagaccagttt
gcggattcgtttgtggagagcctgtggcggctgatccagcacatgatgccatctctgaca
tcttcctccactataagtattaaagaagatgataaacctaaaacagaaaaggataaaaaa
agagaaatgttgccttttctagctttgcctaatgatcccaaggtcattcatatgttggat
gatgaactcaaacctccagtcaaagttaaagaagagataagtcaaaaaagtaaaatcaaa
gaaaaagaaagggaggatgaatggaatagtcataaatggaagaaaaatgagaaggaactt
gaaaaggctgaactgaagagggaaaaaatcacaaagaaggagtctgaaacagagatggat
gatctgatggcctttttagagtctcatgctccatcaaagcagacagaaaaggcaagcaat
caggccaaggagagaaaaaggaggctgagtcgcagtcacagcagagagcgcaggagatcc
aggagccccaggaaacacaagaggaagagggaacgaagtcacagccatggaagggaaaga
cgaagaagccacagcagagaaagacgaagccgcagcaacagtagggagagaagagatgat
ggctatgagaagaggcatggtagagagaagcatgggaacagaaaggatcgacacaggagg
gacagaagtcgatcactcagcaaggacggccacagaagtagaagtcaagttagaaatagt
cacagcacaagcagtagagacatgtttatcagccgtcctccagatgaaaatccagttgtg
ggaaaggtttatgaagggaaggtaacaaacatcttaaactttggatgctttgttcagctg
gaagggctgcggaggaggctggaaggccttgtgcatatttcacagctgcggagagaagga
cgtgtcactaatgtatcagatgtagttgttcggggacaaaaagtgaaggtgaaggtgctg
tcattcacaggacaaaagacttccctctcaatgaaggatgtcaatcaggagacaggagaa
gacctcaaccccaatgtagcacctgtagggattagcaacatggaggaagactctatgaga
aatccagacaggcctatgtctctcatggaactaactaaaggtactgatgaagaagatctt
gcaacatacaagagagtcaaccgaatctcctctcctgaacgctgggagttgaagcagatg
atggcagcaaactgtatcagcaagtcagaaatgcctgactttgatgaggagcagggagtg
atgggtggtgaagatgatgacgaagaagatgtggagattgagctggtagaagaagagcct
gcatttttgcgaggttatggcagagtgagggaagaactgagtccagtcaggataatgaaa
aatcctgatgggtccttagctcaagcagctatgatgcagagtgccctagctaaagaaaga
agagaagtcaagatggcccagagggaaagtgaaatggattctcaaccttcaaatcttggg
caaaactggaatgatcctcttcctgagatccaacgcagtgattctgctatgtcccggggc
ttgacatctcagcagcaagaagtacctgaatggaagagacacatcacaggtggaaccaga
ggatcatatggaaagaaaacaaatatgactatattggagcagcggcaaagcctacccatt
tataaactaagagatgaactaattaaagccatagatggtaatcagattctcattgttgta
ggagaaactggctcaggaaaaaccactcagattacccagtatttggctgaggcaggattc
actgccaagggcaaaataggctgtactcagcctaggcgagtggctgccatgtcagttgca
aaaagagtctctgaagaatttggttgtcgacttggtcaagaagttggttacaccatccgt
tttgaggactgcaccagctcagagacagttataaaatatatgacagatggtatgttgttg
agagagtgcctcattgacccagacatgtcaagctatgcttgcatcatgctggatgaagct
catgaaaggactattcatactgatgtattgtttggtcttctgaaacaggcagtagccaag
agaccagaactaaaactgattgttacttcagctactttggatgctgtaaaattttctgaa
tacttcaaccaggccccaatcttcactatacctggacgaacatttcctgttgagattctg
tacacacgagagccagaaacagactacctagatgcagccctcatcactgtcatgcagatc
cacctgtctgaaccacctggagatattttagtttttctcacaggccaagaggagattgac
actgcttgtgagctgctgtatgaacgaatgaaagcacttggaagtgatgtgcctgagctt
ataatcctgcctgtctattcagctctcccttcagagatgcaaaccaggatctttgagcct
gcacctccaggatccaggaaggtagtgattgctacaaacattgctgagacatccctcacc
attgacggcatttattatgttgtggatccaggatttgtgaagcagaaagtttacaatccc
aagacaggaatggattcgctgatggtgacaccagtgtctcaggcaggagctaaacagcga
gcaggtcgtgcaggacgcactgggccaggcaagacataccggctctatactgagagggct
tacagagatgagatgttacccacaagtgtaccagacatccaaagaactaacttagcatca
acagttctacagctgaaggcaatgggaattaatgatcttctgggttttgactttatggac
cctccacccacagatgccatggttatggctctagaaacacttcactctctcagtgccctg
gatgatgaaggactgctaactcgactggggagacgaatggctgagtttccccttgagccc
aaccttgccaaaatgttgatcatgtctgttcacttacagtgctcagatgagatccttacc
attgtctccatgctgtctgtacaaaatgtattctacaggccaaaggagaaacaagctcta
gctgaccagaagaaagcaaagttcaatcaggcagaaggggatcacctcactctactggct
gtttacaattcttggaagaacaacaagttttcaaatgcttggtgctatgaaaattttgtc
caaatgcgaacattgaagagggcacaggacgtgaggaagcagctattgggcattatggac
agacacaagttggatgtagtaacatgtggcaagaatgttgctcgtgcacagaagactatc
tgttcaggattcttcagaaatgctgccaagaaggatccacaggaaggttaccggactctg
gttgattcacaggtggtctacattcacccatcatcagctcttttcaatcgacaacctgaa
tg
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integrated database retrieval system
