Spiroplasma sp. NBRC 100390: S100390_v1c03290
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Entry
S100390_v1c03290 CDS
T05859
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sprn
Spiroplasma sp. NBRC 100390
Pathway
sprn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S100390_v1c03290 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprn03019
]
S100390_v1c03290 (rny)
Messenger RNA biogenesis [BR:
sprn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
S100390_v1c03290 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_NusA_2nd
KH_2
KH_KhpA-B
dUTPase
DNA_pol3_delta
LapA_dom
Porphobil_deamC
Motif
Other DBs
NCBI-ProteinID:
APE13142
LinkDB
All DBs
Position
354826..356355
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AA seq
509 aa
AA seq
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MEISIWVIIIIAVAIGFYFLGFLCEKYLRFKLIKKTKLKIKQAEEKAKKIINAAKADGKV
EAAQIRQEMNNELARKREEFLETEKFLTNRERLIIEREEVLHSKEQETFRKKEELQGKIN
YYQELVEHNLQQLEKVTGYSLEEAKDVLFKEISDRYQKEIGEFLKNAENTAKINAKETAI
NIVTSAIERYAVNIVAEKTTTSVYLEDDNMKGRIIGKDGRNIRTFEVAAGVDLIIDDTPN
VVQISSFNPIRREIAKKTLEKLLVDGRIQPNRIEETIKLEQEEIEMTILETGKEVVAELE
LDNLDIELIRHLGILKYRTSYGQNVLLHSIEVAKLTAMMASELGLDATIAMRAGLLHDIG
KAVDFDNEGSHVTLGVKLATKCDENPIIINAIASHHGEVSANNPYSVLVSAADTLSAARP
GSRNNNLENYISRMSELEKICQTVVGVQSVYALQAGRQIRVIVNPVISDDDRTHKIAIDI
KEKIKKTKAIPGDIVITVIRELRITETVI
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaaatatctatatgagtaataatcattattgctgttgcaattggtttttactttctt
ggatttttatgtgaaaaatatctaagatttaaattaattaaaaaaacaaagttaaaaata
aaacaagctgaagaaaaggcaaaaaaaattattaatgctgcaaaagcagatggaaaagtt
gaagcagcacaaattagacaagaaatgaataatgaattagctcggaaacgagaagaattt
ttagaaacggaaaagtttttaacaaatagggagcgtttaattattgaacgcgaagaagta
ttacatagtaaagagcaagaaacgtttcggaagaaagaagaattacaaggaaagattaac
tattatcaagaactagttgaacataatcttcaacagcttgaaaaagttactggttattct
cttgaagaagcgaaagatgtactttttaaagaaataagtgaccgttaccaaaaagaaatt
ggtgaatttttaaaaaatgctgagaatacagcaaaaattaacgccaaagaaacagccatt
aatattgttactagcgcaattgaacgttatgctgttaatattgtggcagaaaaaacaact
acttctgtttatttggaagatgataatatgaaaggacggattattgggaaagacggccgt
aatattcgaacttttgaagtagccgctggagtggatctaatcattgatgatactccaaat
gttgttcaaatttcatcttttaaccccattcgccgtgaaattgccaaaaaaacattagaa
aagctattagttgatggacggattcaaccaaatcggattgaagaaacaatcaagttagag
caagaagaaattgaaatgacaattttggaaacaggaaaagaagttgttgctgaattagaa
ttagataatttagacattgaattaattcgccatctaggaattttaaaataccgaactagt
tatgggcaaaatgttttattgcattcaattgaagttgctaaattaacggcaatgatggct
agtgaattaggtttagacgcaacgattgcaatgcgagctggtctattacatgatattgga
aaagcagttgattttgataacgaaggaagccatgttaccttgggagttaagttagcaaca
aaatgtgatgagaatccaattatcattaatgcgattgcttcacatcatggtgaagtctct
gctaataatccatattcagttttggtttctgctgccgatacattatcagcagcacgacca
gggagccgtaataataatcttgaaaattatatttcccgtatgtctgaattagaaaaaatc
tgtcaaacagtagttggtgttcaatcggtttatgctttacaagcaggacgtcaaattcgt
gttattgttaatccagttattagtgatgatgaccgtacacacaaaattgcaattgatatt
aaagaaaaaattaaaaaaacaaaggcaattccaggggacattgttattacagtaattaga
gagttacgaataacagaaactgttatttaa
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