Spiroplasma sp. NBRC 100390: S100390_v1c04780
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Entry
S100390_v1c04780 CDS
T05859
Symbol
nfo
Name
(GenBank) endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
sprn
Spiroplasma sp. NBRC 100390
Pathway
sprn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sprn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
S100390_v1c04780 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprn03400
]
S100390_v1c04780 (nfo)
Enzymes [BR:
sprn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
S100390_v1c04780 (nfo)
DNA repair and recombination proteins [BR:
sprn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
S100390_v1c04780 (nfo)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
APE13291
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All DBs
Position
537766..538692
Genome browser
AA seq
308 aa
AA seq
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MKDYNLIIGSHVSMNKQQDYLLGALTESLNNDANAMMIYTGPPQNTIRVNTDHFFISEFY
QQLEVQHFSIDNVIIHAPYIINLGNTTNPSTFEIAVEFLKKEIIRADEMGIKTIVLHPGS
AVGAPEQVGLDRIVEGLNLVLSPNQKAKIALETMAGKGSELGTNFEQLKYIIDNVTLKDK
IGVCWDTCHMHDAGYQFKEDLDDIINQFDQLIGLDRLLCLHINDSKNPLNAHKDRHENIG
YGYLGFETILKIIYHPKLNGMIKILETPYVGEKGKAFAPYRAEIAMIKAKQFTDPFQVNG
KVIIDVGE
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgaaagattataatttaattattggaagtcatgttagtatgaacaaacaacaagattat
ttgttaggtgcattaacagaaagtttaaataatgatgctaatgcgatgatgatctatact
ggaccacctcaaaacacgattcgtgttaatactgatcatttttttatttcagaattttat
cagcaattagaggtacaacatttttcaattgataatgttattattcatgccccatatatt
attaatttaggtaatacaacaaatcctagtacatttgaaattgctgttgagttcttaaaa
aaagaaattattcgtgctgatgaaatgggaattaaaacaattgttttgcacccaggtagt
gctgttggtgctccagaacaagttggtttagaccgaattgttgaaggtttaaacttagtg
ttaagtccaaatcaaaaagcaaaaattgctttagagacaatggctggaaagggtagtgaa
ttagggactaactttgagcaattaaaatatattattgataatgtaacactgaaggataaa
attggggtttgttgagatacttgtcatatgcatgatgctggttatcagtttaaagaagac
ttggatgatattatcaatcaatttgaccaattaattggtttagaccgtttgttatgttta
catattaatgatagtaaaaatcctttgaatgcacataaagatcgacatgagaacattggt
tatggttatttaggatttgagacaattttaaaaattatttatcatccaaagttaaatgga
atgataaaaattttagaaacaccatatgttggcgaaaaaggaaaagcttttgcaccatat
agagctgaaattgcaatgataaaggcaaaacagtttacagacccgtttcaagtaaatggt
aaagtaataatagatgtaggagaataa
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