Spiroplasma sp. NBRC 100390: S100390_v1c09070
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Entry
S100390_v1c09070 CDS
T05859
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sprn
Spiroplasma sp. NBRC 100390
Pathway
sprn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S100390_v1c09070 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprn03019
]
S100390_v1c09070 (pnp)
03016 Transfer RNA biogenesis [BR:
sprn03016
]
S100390_v1c09070 (pnp)
Enzymes [BR:
sprn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
S100390_v1c09070 (pnp)
Messenger RNA biogenesis [BR:
sprn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
S100390_v1c09070 (pnp)
Transfer RNA biogenesis [BR:
sprn03016
]
Prokaryotic type
tRNA degradation factors
S100390_v1c09070 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
SPATA25
OB_PDCD11
HAMP_PhoQ
RNase_Zc3h12a_2
FF_URN1
Catalase-rel
Motif
Other DBs
NCBI-ProteinID:
APE13713
LinkDB
All DBs
Position
complement(1029911..1032019)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKQVFKKIINNRPLIVEYGQLAKQASGAVLIRYGETVVLVTATVSNKVSETDFFPLTVV
FQEKLYSVGKIPGGFLKREGKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDN
DSDVRIASLFGASLALGISKIPFAGPVAGALLTVDQNQNIIVDPTLEQLNTGQMELIVAG
TADAINMVEAGAKEVSETIMLEAILRGHKVIAELVAFQHEIIAKVGQPKMDVTLFTVRRE
IIDYVKEHYATKLIAAAQIKEKVVRYETIQVLTEQALEHYPIAKEMTEKEQQRIISELKT
ALHAVVRQEVRRQILIDKTRLDGRHLDEIRPLTSEIDVLPVVHGSALFARGETQVLSVVT
LGALGENQIIDGITDEDGKRFMHHYNFPPFSVGETGRMGPPSRREIGHGALGEKALLQII
PSEKVFPYTIRIVSEVLESNGSTSQASICAATLALMAAGVPITAPVVGIAMGLVKEDDNY
TILTDIQGMEDHLGDMDFKVAGTAKGICALQMDIKIAGINEAILQEALLAAKKARLQILD
NVLATIAVPRTQLAPTAPKMKTFMIPVDKIREVIGPGGKMITAIIEKADDVKIDIEDDGQ
VTIYHKDYPAIEKAYELIKAIAMPVEIGTEITGPVVKIEKFGAFVNLKENVDGLIHISKL
AEKRVEKTEDIVQLNDFVKVKVLEVDSKGKIKLQLLEVLPKK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacaagtatttaaaaagataattaataatcgtccgttgattgttgaatatggg
caattagcaaaacaggcaagtggggctgttttaatccgttatggtgaaacagtagtctta
gtaaccgcaacagttagtaataaggttagtgaaactgatttttttccattaacagttgtt
tttcaagaaaaattatattcggttggaaaaatcccagggggatttttaaaacgagaaggg
aaaccatcagaatatggaaccttgtcagcacgggtgattgatcgtgctttacgaccatta
ttttcagaaaattttcgaaatgaagtccaaattgttattaatgttttagctgttgataac
gatagtgatgttcgaattgctagtttatttggggcatcattagcacttggaatttcaaaa
attccgtttgctggaccagtagcaggagcattgttaacagttgatcaaaatcagaatatt
attgttgatccaaccttagaacagttaaatactggccaaatggaattaattgtagcagga
actgctgatgcaattaatatggtagaagctggggcgaaagaagtttcagaaacaataatg
ttagaagcaattttaagggggcataaggtaattgctgaattagttgcctttcaacatgaa
ataattgctaaagttggtcaaccaaaaatggatgtcacattatttactgttcgtcgcgaa
attattgattatgttaaggaacattatgcgacaaaattaattgctgcggcacaaattaag
gaaaaagttgtccgttatgaaacaattcaagttttaacagaacaagccttggaacactat
cctattgcaaaggagatgaccgaaaaagaacagcaacgaattatttcagaattaaaaaca
gcattgcatgctgttgttcgtcaagaagttcgtcgtcaaattttaattgataaaacaaga
ttagatggtcgccatcttgatgaaattcgacctttaactagtgaaattgatgtcttacca
gttgttcatgggagtgctttatttgcccggggtgaaacacaggtcttgtcggttgtgaca
ttaggggccttaggggaaaatcaaattattgatggtattactgatgaagatggcaaacgc
tttatgcaccattataatttcccccccttttctgttggtgaaacaggacgaatggggcca
ccatcgcggcgtgaaattggccatggggccttaggagaaaaagcattgttacaaattatt
cctagtgaaaaggtctttccatatacaattcgaattgtttcagaagtattagaatcaaat
ggtagtacttcgcaagcttcaatttgtgcggcaaccttggctttaatggcggcgggggtt
ccgattacagcaccagtggtaggaattgcaatggggttagtaaaagaagatgataattat
actattttaactgatattcaagggatggaagatcatcttggcgatatggattttaaagta
gcaggaacagcaaaagggatttgtgccttgcaaatggatattaaaattgcgggtattaat
gaagcaattttacaagaagcgttattagcagcaaaaaaagcgcgcctacaaattcttgat
aatgttttagcaacgattgctgtgccacgaacacagttagcaccaacggcaccgaagatg
aaaacatttatgattccagttgataaaattcgagaagtgattggtcctggtggtaagatg
attacagccattattgaaaaagccgatgatgttaaaattgacattgaagatgatggacag
gtaacaatttatcataaggattatcctgcaattgaaaaagcttatgaattaataaaagcg
attgcgatgccagttgaaattggaactgaaataacaggacctgttgttaaaattgaaaag
tttggggcctttgttaatttaaaagaaaatgttgatggtttaattcatatttcaaaatta
gcagaaaaacgggttgaaaaaacagaagatattgtgcaattgaatgattttgttaaagtt
aaagttttagaagttgatagtaaaggaaagattaagttacaattacttgaagttttacca
aaaaaataa
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