Salinivibrio proteolyticus: N7E60_01740
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Entry
N7E60_01740 CDS
T08723
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
spro
Salinivibrio proteolyticus
Brite
KEGG Orthology (KO) [BR:
spro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spro03019
]
N7E60_01740 (csrD)
Messenger RNA biogenesis [BR:
spro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N7E60_01740 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
WBA15063
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All DBs
Position
348907..350886
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AA seq
659 aa
AA seq
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MERTANAIKVSGMKLTNRLVAFVTLIVVCAIFVLFIGGAISFRQLGIDFISHYVDGMVEV
IDQEMATEQRDNQYFSRWLPKMLKASDVTSLTIYSDAGILYQYEQIHYQAPTTQQAITRD
IPLANNPGFAVKLTFVPPYAEFAYSIGPLSSLSAAILVIVLGLAWGIQWLRRQLYGSEVL
EQRGRLILAGRLDEAQHGDTHEWPIPASAALTQLIEELKEARQERSRFDTFIRTNTFLDQ
LTGAANRVMFDNRLHTLASDDASQGSLILVRVADWEDLLEQQGQEGADALIQGMGSVLSN
AIQRFPDAVLARYFASDFAILLVNQAGEEVHPFLSQLTNALNKLSPPDTLDADNWFHMGM
TSFGAGERRGRLMDEAERALRAAQLEGHSGWSQFDKDIRRLDKRGSVRWRTLLESVMAGE
GPMLYRQPVYARDGKTRLHYELLGRIKDENGKVLKASRFWPGVELVGMDVVFDKATVSRA
LWWLKTADHIDNYAINVSVHSLCQREFVIWLRDALLQTPRSILNRLLVEVSEGALVAQFD
AARPCLRMIAALGCRLVVDQAGRTVVSTHYVKDIQPAYIKLHRSLVRNIHQRPENQLYLR
SMLGACEATTTDVLAVGVETDLEWQVVKELGVVGGQGRLLGAEMSPHPAQKKRRRWGKR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaacagccaacgccatcaaagttagcggcatgaagcttaccaatcgattagtg
gcgtttgtcaccctgattgtggtgtgtgccatttttgtcttatttatcggtggggcaatt
agctttcgtcaattaggtatcgattttatctcacactatgtggatggcatggtggaggtg
atcgatcaggaaatggccaccgagcaacgggacaaccagtatttttcacgttggctgcct
aaaatgctcaaggcgagtgatgtcacctcgctgaccatctactccgatgcgggcatcctt
tatcagtacgagcaaattcattatcaagccccgaccacgcaacaagcgattacccgagac
attccgctggcgaataaccccggctttgctgtgaagctgacctttgtgcccccgtatgcc
gagtttgcctactccattgggccgctgtcgtcactttcagcggccattttggtgattgtg
ctgggcttggcgtgggggatccaatggttacgccgacagctttatggcagtgaggtcttg
gagcagcgagggcgcttaatcttagctggcaggcttgatgaagcgcaacatggcgatact
cacgagtggccgatccctgccagtgccgcattgacgcaattaatcgaggaattgaaagaa
gctcgccaagagcgaagtcgctttgatacctttattcgcactaataccttccttgatcag
ctgactggagcggcgaaccgagtcatgtttgataaccgcttgcacacgttagccagcgat
gatgcgagccaaggtagcttgattttagtgcgtgtcgccgactgggaagacttgcttgaa
cagcaggggcaagaaggcgctgatgcgctgattcaaggcatgggcagtgtgttatcgaat
gcgatccaacgttttcctgatgcggtactggctcgctactttgcctcggattttgccatt
ctgttggttaaccaagctggggaagaagtccatccctttttgtctcaacttaccaacgca
cttaacaagcttagcccgccagatacgctggatgccgacaactggttccatatgggcatg
acctcatttggggcgggagagcgccgaggtcgcttgatggatgaagccgagcgtgctctg
cgagcggcccaactggaagggcatagcggctggtcgcaatttgacaaagacattcgccgc
ttagacaaacgcggcagtgtgcgctggcgtacgctgttggaatcggtgatggcgggggaa
ggaccgatgctgtatcgccaacctgtctatgcgcgggatggcaaaacccgtcttcactat
gaacttttaggtcggatcaaagacgaaaatggcaaggtgttaaaagcctctcgattctgg
cctggggtcgagttggtcggtatggatgtggtgtttgataaagcgacggtgagccgtgcg
ctgtggtggttaaaaaccgctgatcatatcgacaattatgctataaatgtaagtgttcac
tcactttgccaacgcgaatttgtgatttggttgcgtgatgcgttattgcaaacaccccga
agtatcctcaatcgtttgttggtggaagtgtctgaaggtgccttagtggcgcaatttgac
gcggcgcgcccttgtttgagaatgatagccgcgttagggtgccgactcgtggtcgaccaa
gctggtcgaacagtagtgagcactcactatgtaaaagatattcagccagcgtatatcaag
ttacatcgtagcttagtgcgtaatattcatcagcgccctgaaaaccaattgtacttacgc
agtatgctgggggcgtgtgaagctactaccaccgacgtcttggcagtaggtgtggaaacg
gacctagagtggcaggtggtcaaagagctgggcgtcgtgggggggcaagggcgcttactc
ggtgcggaaatgtcgcctcatcctgcgcaaaagaaacgccgccgctgggggaaacgatga
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