Salinivibrio proteolyticus: N7E60_02940
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Entry
N7E60_02940 CDS
T08723
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spro
Salinivibrio proteolyticus
Brite
KEGG Orthology (KO) [BR:
spro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spro03009
]
N7E60_02940 (rlmD)
Enzymes [BR:
spro01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
N7E60_02940 (rlmD)
Ribosome biogenesis [BR:
spro03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
N7E60_02940 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
MTS
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
Methyltransf_11
Cons_hypoth95
Methyltransf_4
PrmA
Methyltransf_23
DOT1
UPF0020
Methyltr_RsmB-F
Ubie_methyltran
CMAS
Motif
Other DBs
NCBI-ProteinID:
WBA15284
LinkDB
All DBs
Position
596952..598268
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AA seq
438 aa
AA seq
DB search
MARFFKPQKKKNVEQKHQLLAIQRLDHHGDGVGYWQKKPVFVPGTLPGEQALVQLTEQKR
QYARAKLIKLDQRAETRIEPACPLYQQCGGCSLQHLSHSGQVAHKRAVLTELIEKFAGDE
TVELSDGAIDSPWQYRRRARISLKVDNKGALTMGFRARQSNAIVDVGHCPVLSEPLNQLL
ASLRPCLDGLRGRRILGHVDLIEADNGCIASLRTTKALHPEDRQALQAWAELTGCMLYWQ
QADGPLERVVGEPPYYESQQTRLYFQPGDFIQVNAAVNQQMVAQALNWLELASTDVVLDL
FCGLGNFSIPMAKQAKTVIGVEGVEAMVSQAQDNAKANQVSNAQFYQADLNGETLNGDWT
QHAFDKILLDPARAGAAGVMDFVAQSSATHIVYVSCNPATLARDSRVLLAQGYQLTRLSM
LDMFPQTGHLESMALFRR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcttttttaagcctcagaagaaaaaaaacgttgaacaaaagcatcagttgctc
gcgattcaacgcctcgaccaccacggtgatggggtcggctattggcagaaaaaaccagtc
tttgttccgggtaccttgcccggtgaacaggcgctggtgcagctcaccgagcaaaagcgc
cagtatgcgcgggccaaactgattaaactcgaccagcgcgcggaaactcgcattgagccg
gcttgtcctttgtatcagcaatgtggcggctgtagtttgcagcatttaagccactcaggc
caagtggcacacaagcgcgcagtgctgacagaattgattgaaaaatttgccggagacgag
acggtcgagctgtcggatggcgccatcgatagcccttggcagtatcgtcgtcgcgcgcgc
atcagcttgaaagtcgataataaaggggcgctgaccatggggtttcgagcccgtcaaagc
aatgccattgtcgatgtgggccactgtcctgttctcagtgagccattaaatcagctgctt
gccagcttgcggccttgtttagatgggctgcgaggacgccgaatcctcggccatgttgat
ttgattgaggcagacaatggctgtattgcgtcgttgcgcaccactaaggcgttgcatcca
gaagataggcaagcgcttcaagcatgggcagagctgacaggctgcatgttgtattggcag
caagctgatgggccgcttgagcgagtggtgggcgagcctccgtattacgagagccaacaa
acccgcctctattttcagcctggcgactttattcaagtcaacgcggcggtgaaccaacag
atggttgcccaagcactgaattggctagagcttgcgtcaaccgatgtggtgttggatctg
ttttgtggtcttggcaacttcagcatccccatggcgaaacaggcgaaaaccgtgattggt
gtagaaggggttgaggcgatggtgtcgcaagctcaggataatgcgaaggccaaccaagta
agcaatgcgcagttttaccaagcagatctcaatggtgagacgctgaatggggactggaca
cagcacgcatttgataaaatcctgctcgatcctgcccgagcaggggctgccggagtgatg
gactttgtggcacaatctagcgctacacacattgtatatgtgtcctgcaacccagcgacg
ctggcgcgggatagtcgcgtgttgttggcacagggttaccaattaactcgcttgagtatg
cttgatatgtttccgcaaacagggcatttggaatccatggcactatttcgacgctag
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