Salinivibrio proteolyticus: N7E60_06975
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Entry
N7E60_06975 CDS
T08723
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
spro
Salinivibrio proteolyticus
Brite
KEGG Orthology (KO) [BR:
spro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spro03019
]
N7E60_06975 (hrpA)
Enzymes [BR:
spro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N7E60_06975 (hrpA)
Messenger RNA biogenesis [BR:
spro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N7E60_06975 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
SLFN-g3_helicase
ABC_tran
T2SSE
ResIII
NACHT
NTPase_1
TsaE
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WBA16105
LinkDB
All DBs
Position
1445986..1449822
Genome browser
AA seq
1278 aa
AA seq
DB search
MLQDRFRFKKRIHGAQKIKKDDAKQAVYDQIAAEMAQSMQRLLARRANTPTVRYPEELPV
SQKKDDIAEAIANNQVVIIAGETGSGKTTQLPKICMELGLGVAGTIGHTQPRRLAARSVA
SRIAEELDVELGSSVGYKVRFNDKVSEATQVKLMTDGILLAEIQHDRYLNQYDCIIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPERFSKHFNNAPMIEVSGRTYPVEVR
YRPLVEEDDSDRDQLEAISDAVDELCLEGPGDILIFMNGEREIRDTADYLQRRQLRDTEI
LPLYARLSAGEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKV
QRLPIEPISQASANQRKGRCGRVSEGICVRLYSEEDFLGRPEFTDPEILRTNLASVILQM
TALGLGDIQAFPFVQPPDSRHIKDGVRLLEELGAIKPGQATDKRKLTAIGKTLAKLPIDP
RLARMVIEAPKHGALNEVMVIAAALAIQDPRERPADKQQQADEKHRRFADKESDFLAYVN
LWDYVKEQQKALSNNQFRKQCKKDYLNYLRVREWQDVHYQITQVMKEQNAQFNQEPASYQ
AVHMALLAGLLSHIGLKDQEKNEYQGARNARFHIFPGSGLFKKQPKWVMVAELVETSKLW
GRIVARIQPEWVEPLAQHLIKRSYSEPHWSRKQAAVMASEKVTLYGIPIVASRKVNYGAI
DPVLSRELFIRSALVEGDWQTKHAFFRQNQKLLAEVEELELKSRRRDILADDDTLFDFYD
QRLDHSVVSGRHFDTWWKKARQDNPDLLNFEKAMLLQGDASHVTELDYPNFWYQGNLKLK
LSYQFEPGQDHDGVTVHIPLPILNQVSEEGFDWHVPGLRHELIVALIKSLPKPLRRNFVP
APNYADAVLQRVTPMEAPLLDSMEKALKQMSGVTIARDSWNVAQLPEHLRIQFRVVDDKN
RTLAESEDLHALKLSLKDKVQATLSDVADDDIEQQGLTQWTFGELPKRYQQKRSGFEVKA
YPALVDEKDSVAIRLFETEDQQHKAMQAGQRRLVLLNVPSPIKYLHTHLPNKSKLGLYFN
PYGRVLDLIDDCIACGVDKLIEQHGGLTWEAQAFEALKETVRAELGDTVVDIAQQVEQIL
THAFSINKKLKGKVDLSMAFAMSDIKAQLEGLIYKGFATESGWQRLPDILRYMKAIERRL
EKLPIDPARDRSHMLKIESVMNDYKALLNKLPKGKTLPDEVKAIRWMIEELRVSYFAQQL
GTPYPISDKRIKNAIAAI
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaagaccgttttcgttttaaaaagcgcatccatggcgcacaaaaaatcaaaaaa
gacgacgccaaacaggcggtgtacgatcaaattgccgctgaaatggcgcagagtatgcag
cgcctgctcgcccgtcgagccaatacgccaaccgttcgctacccggaagagttgccagtc
agtcagaagaaagatgacattgccgaggcaatcgcgaacaaccaagtcgtgatcattgcg
ggtgaaacgggctcaggcaaaaccactcagctgcccaaaatctgtatggagcttgggcta
ggcgtcgccggtaccataggtcacactcagccacgtcgcttggctgcacgctcggtcgct
tcacggattgctgaagagcttgacgttgagttaggcagcagcgtcggctataaagtgcgc
tttaatgacaaagtctcagaggcgacgcaagtcaaactgatgacggacgggatcttactg
gccgaaattcagcacgatcggtatctgaatcagtacgactgcatcattatcgatgaagcc
cacgagcgcagcctaaatatcgactttattctcggctatttgcgcgagttattgcccaag
cgccccgatctcaaagtcatcattacctcggcaaccatcgatcctgaacgtttttctaag
cacttcaataacgcgcctatgatagaggtgtctggccgtacttatccggtggaagtgcgc
taccgccccttggtggaagaggacgatagcgatcgtgaccagctggaagcgatcagcgat
gcggtcgatgagctttgccttgaagggccgggtgatatcctgatttttatgaacggtgag
cgtgagatccgcgacaccgccgattaccttcagcgtcgtcaactgcgcgacaccgaaatt
ttacccttatacgcgcggctttctgcaggcgagcaaaatcgtgtatttcaatctcactcg
gggcgccggattgtactggccaccaacgtcgctgagacctcgctaaccgttccgggcatt
aagtatgtgattgaccccggtacggcgcgtatttctcgctatagttaccgaactaaggtg
cagcgattgccaattgagccgatttcacaggccagtgctaaccagcgtaaagggcgctgt
ggccgtgtgtcggaaggcatttgtgtgcgcctgtatagcgaagaggactttttaggccgt
cctgaatttaccgacccagaaattctgcggactaatctggcttcggtgatcttacaaatg
acggcattagggctcggtgatattcaagcctttccgttcgttcagccgcctgatagccgt
cacatcaaagatggtgtccgtttgctcgaagagctgggggcgatcaagcccggccaagcc
actgataaacgtaagctgaccgcgattggtaaaaccttggccaaactgccgattgacccg
cgtttggcacgcatggtgattgaggcgcccaagcatggtgccttaaatgaggtgatggtg
attgccgcggccttagcaatccaagacccgcgtgagcgtccagcggataagcagcaacaa
gcggatgaaaagcaccgtcgttttgccgataaagaatcggactttttggcctatgtaaac
ctttgggactacgtcaaagagcagcaaaaagcgctatcgaataaccagttccgtaaacag
tgcaaaaaagactatctcaattacttgcgggtgcgagagtggcaagacgttcactatcaa
atcacccaagtaatgaaagagcaaaatgcacaattcaaccaagagcctgccagttatcag
gccgttcacatggccctgctcgccgggctattaagccacattggcctgaaagaccaagaa
aagaacgaataccaaggcgcgcggaatgcacggttccatattttcccgggttctgggctt
ttcaaaaagcagcctaaatgggtgatggttgccgaactggttgaaacctcgaaactctgg
gggcgaattgttgcgcgtatccaacctgaatgggtggagccactggcgcagcatttgatt
aagcgcagctacagtgaaccacattggtcacgcaagcaagcggctgtcatggccagcgag
aaggtcacgctatacgggatcccgattgtcgccagccgtaaagtcaattatggcgccatc
gatccggtgcttagccgtgagctgtttattcgttcggcattggttgagggagattggcag
accaaacatgcctttttccgccaaaaccaaaagctgttggcggaagtggaggagctcgag
ctcaaatctcgccggcgcgatattttggcagacgatgataccttgttcgacttttacgat
cagcgcctcgatcatagcgtggtcagtgggcgtcacttcgatacctggtggaaaaaggca
cgtcaagacaatccggacctgcttaactttgaaaaagccatgctattgcaaggcgacgct
agccatgtcacggagctggattaccctaacttttggtatcagggcaacctaaaactcaaa
ttaagctaccaattcgagccgggccaagaccacgatggggtgacggtgcatatcccactg
ccgatccttaaccaggtgtcagaagaaggctttgattggcacgtccccgggctacgtcac
gagctaattgtcgcgctgattaaatctttgcctaagccgttacgacgtaactttgttccg
gcaccaaactatgcggatgcggtcttgcaacgagtgacgcccatggaagcgcctttgctc
gatagcatggaaaaagccctaaagcagatgtccggtgtcaccattgcgcgcgacagctgg
aatgtggcgcaattgccagagcatctgcgcattcaattccgcgttgtggatgataaaaat
cgcaccttggctgaaagcgaagatcttcatgcactgaaactgtcactgaaagataaggtg
caagcgacgttatcggatgtggcagatgatgacattgaacagcaaggactcacccaatgg
acatttggggaactgccgaaacgctaccagcaaaagcgcagcgggtttgaagtcaaagcg
tatccggctttagtcgatgaaaaagacagtgtcgcgatccgccttttcgaaacggaagat
caacaacataaagccatgcaagcggggcagcgtcgactggtcttgctcaatgtgccatcg
ccgataaaatacctgcacacccatttgcccaacaagtcgaaactcggtctgtattttaac
ccctatggccgtgttttggatttgattgatgactgtatcgcctgtggcgtggataagctc
attgagcaacacggcgggttaacctgggaagcgcaagcattcgaagcccttaaagagacg
gtgcgtgcggagctaggtgataccgtggtggatattgctcaacaggtcgaacagatttta
acccatgcctttagcatcaataaaaagctaaaaggcaaagtggatctttcgatggcgttt
gcgatgtcggatatcaaagctcaactagaagggctgatttacaaaggctttgctaccgaa
tcaggctggcagcggctgcccgatattttacgctatatgaaagcgatagagcgtcggtta
gagaagctgccgattgatccagcgcgagatcgcagtcatatgctcaagattgaatctgtg
atgaatgactataaggcgttgctgaataagttaccgaaaggtaaaactctccctgatgag
gtaaaagctatacgctggatgattgaagagcttcgagtgagttacttcgcgcagcaactg
ggtacgccttatccgatttcagacaagcggattaaaaacgccattgcggcgatttaa
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