Sphingomonas sp. R1: OIM94_02260
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Entry
OIM94_02260 CDS
T11062
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sprr Sphingomonas sp. R1
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sprr03016
]
OIM94_02260
Enzymes [BR:
sprr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OIM94_02260
Transfer RNA biogenesis [BR:
sprr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OIM94_02260
Prokaryotic type
tRNA splicing ligases
OIM94_02260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
UYY77854
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Position
469468..470691
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AA seq
407 aa
AA seq
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MTTTYEYQHVEGGVPIKMWTRGVPVEDGARAQLTRAAQMPFVFKHVAAMPDVHVGIGATV
GSVIPTKGAVIPAAVGVDIGCGMMAARTSLMASDLPDNLEGIRSAIEQAVPHGRSVGRGQ
RDHGSWGAPPSAIVEAWATLAARFQRITDKFPRLKNTNNVSHLGTLGTGNHFIELCLDQE
QRVWVMLHSGSRGVGNAIGTFFIELAKQDMRKWHINLADQDLAYFPEGTDHFDDYVEAVG
WAQDYAALNRQMMMTNVIAALRGQIAKPFEAELEAVNCHHNYVTRENHFGENVLVTRKGA
VRAAKGVLGIIPGSMGAKSFIVRGLGNPESFDSCSHGAGRVMSRTAAKKLVTLDEHIADT
AGVACRKDEGVIDETPRAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacctatgagtaccagcatgtcgaaggcggcgtgccgatcaagatgtggacg
cgcggggtgccggtggaagacggcgcgcgcgcccagctcacccgcgcggcgcagatgccg
ttcgtgttcaaacatgtcgcggcaatgcccgacgtgcatgtcggcatcggcgcgaccgtc
ggctcggtgatcccgaccaagggcgcggtgatcccggcggcggtgggcgtcgatatcggc
tgcggcatgatggccgcgcgcacctcgctgatggccagcgacctgccggacaatctggag
ggtatccgttcggcgatcgagcaggcggtgccgcacggccgctcggtcggccgggggcag
cgcgaccacggttcgtggggcgcgccgccgtcggcgatcgtcgaggcgtgggcgacgctt
gctgctcgcttccagcggatcaccgacaagttcccgcggctgaagaacaccaacaatgtc
agccatctgggcacgctcggcacgggcaaccacttcatcgagctgtgcctggaccaggaa
cagcgggtgtgggtgatgctgcattcgggctcgcgcggcgtcggcaatgcgatcggcacc
ttcttcatcgagctggcgaagcaggacatgcgcaaatggcacatcaacctggccgatcag
gacctcgcctatttcccggaagggaccgaccatttcgacgattatgtcgaggcggtcggc
tgggcgcaggactatgccgcgctcaaccggcagatgatgatgaccaacgtcatcgccgcc
ctgcgcgggcagatcgccaagccgttcgaggcagagctggaggcggtgaactgccaccac
aactatgtgacgcgcgagaaccatttcggcgagaatgtgctcgtcacccgcaagggggcg
gtgcgcgcggccaagggtgtgctggggatcatcccgggatcgatgggcgccaagtcgttt
atcgtgcgcgggctgggcaacccggaatcgttcgacagctgcagccacggcgcggggcgg
gtgatgtcgcgcactgcggccaagaagctggtgacgctcgacgagcatatcgccgacacg
gcgggcgtcgcctgccgcaaggacgaaggcgtgatcgacgagacgcccagggcctacaag
ccgatcgaagccgtgatggccgcccaggctgatctggtggagatcgtccacaccttgaag
caggtggtgtgcgtgaaggggtaa
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