Sphingomonas sp. R1: OIM94_04785
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Entry
OIM94_04785 CDS
T11062
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OIM94_04785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_04785 (mfd)
Enzymes [BR:
sprr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OIM94_04785 (mfd)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OIM94_04785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UYY78324
LinkDB
All DBs
Position
993006..996479
Genome browser
AA seq
1157 aa
AA seq
DB search
MPDLKTILSAKHPLTLAGVPAGFLPWMLADVARAARTTVFIAADEAGMRAIAGTAAFFAP
ELDVLTYPAWDCLPYDRASPTLRVMAERLATLHALQGKSEAPRLLVTTVNAATQRTLTPF
RIRQLVARLAPGERIGLDKLAALLQANGYVRVETVNDHGEFAVRGGLVDLFPSGAEQALR
LDFFGDEIESVRTFDPQDQRTTGRVDGFTLLPASEALLDEESIKRFRSGYRDRFGATATG
DPLYQAISEGRRLAGMEHWLPLFEERMETLFDHLPDHAVIVRDSGVPAAAEQRFEAIKDY
QDNRIKAQSADPGSYRPLKAGDLYLLAKEWQGKVDGLPMHLATTFHEPESDRVVEFGVDG
PRDFAPERAAGTNVYEAVVAHLKGLRKEGRKPVLASYSNGARERLKGLLEDHGLTGAVPV
DGWQPALGVANPNGSGLQVALVVLPLDHGFTAPDVAVLTEQDMLGDRLVRRSKRRKNTDA
FLQELATLSPGDLVVHLDHGIGRYEGLTQIPVQKAPHDCVALEYAGGDKLYVPVENLEVL
SRYGSGEEGATLDRLGGEAWQRRKARMKERIREIAGELIATAALRATRGADIAEPDHGGY
PAFVDRFPYEETDDQDRAIGDVLSDLGAGRPMDRLVVGDVGFGKTEVALRAAFVAAMAGM
QVAVVCPTTLLARQHYNNFKARFEGFPLEIGRLSRLVTATETKKVKEGLAAGTIDVVVGT
HAVLSKTIDFKRLGLVIVDEEQRFGVTHKERLKALKTDVHVLTLTATPIPRTLQMAMSGL
RELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSYFVTPRIADLPEIEEFLR
SEVPEIRYVVAHGQMAPTEVEERMSAFYDKKFEVLVSTTIVESGLDIPSANTLIINRADK
FGLAQLYQLRGRVGRSKTRAYAYMTTPPERQMTEAAEKRLKVLSDLESLGAGFQLASHDL
DIRGAGNLLGDEQSGHIKEVGYELYQSMLEEAILEAKSGGLRDDARPKDLSPQITVDAPI
MIPEDYVPDLDLRMGLYRRLNEVEETDGIESFAAELIDRFGKLPEPTENLLRLIETKLNA
KRACIAKLDLGPKGALVTFHNDQFPNPEGLIAYVEKLGETARLRPDMKLVINRAWANPAA
RLHGALQLSRGLAKAAG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctgaagacgatcctttccgcgaaacacccacttacgctcgccggcgtgccg
gcgggctttctgccgtggatgctggccgatgtcgcccgcgccgctcgcacgaccgtgttc
atcgccgccgacgaggccggcatgcgcgcgatcgcggggacggcggccttcttcgcgccg
gaactggacgtcctcacctaccccgcctgggactgccttccctatgaccgcgcgagcccc
acgctgcgggtgatggccgaacggctggcgacgctccacgcgctgcaaggcaagagcgag
gcgccgcgcctgctcgtgaccacggtcaacgctgccacccagcgcaccctcacgcccttc
cgcatccgccagctcgtcgcgcggctggcgccgggcgaacggatcgggctcgacaagctg
gcagcccttctccaggccaacggctatgtccgcgtcgagacggtgaacgatcacggcgag
ttcgcggtacgtggtgggctggtcgatctgttccccagcggcgccgagcaggcgctgcgg
ctggatttcttcggcgacgagatcgaaagcgtccgcaccttcgacccgcaggaccagcgc
accaccggccgcgtcgacggcttcaccctgttgcccgccagcgaggcgctgctcgacgag
gagagcatcaagcgcttccgcagcggctatcgcgaccgcttcggtgccaccgcgacagga
gatccgctgtaccaggcgatcagcgagggccgccgcctggccggcatggaacattggctg
ccgctgttcgaagagcggatggaaacattgttcgaccatctgcccgatcatgccgtgatc
gtccgcgacagcggcgtgcccgcggccgccgagcagcgcttcgaggcgatcaaggactat
caggacaaccggatcaaggcacagtcggccgatcccggcagctaccggccgctcaaggcg
ggcgacctgtatctgctcgccaaggagtggcagggcaaggtcgacgggctgccgatgcac
cttgcgacaaccttccacgaacccgagtcggatcgcgtcgtcgagttcggcgtggatggt
ccccgggatttcgcgcccgagcgcgctgccggcaccaatgtgtatgaggcggtcgtcgcc
cacctcaagggactgcgcaaggagggacgcaagcccgtcctcgccagctactccaatggc
gcgcgcgaacggctgaagggcctgctcgaggatcacggcctcaccggcgcggtgccggtg
gatggctggcagccggcgctgggtgtcgccaaccccaatggcagcggactgcaggtcgcc
ctggtcgtgctgcctctcgatcacggcttcaccgcgcccgacgtggcggtgctcaccgag
caggacatgctcggcgaccggctcgtccgccgttcgaagcgccgcaagaataccgatgcc
ttcctccaggagctggcgacgctctcgccgggcgatctggtcgtccacctcgaccacggc
atcggccgctatgagggcctgacccagatcccggtgcagaaggcgccgcacgattgcgtc
gcgctcgaatatgccggcggcgacaagctctacgtgccggtcgagaatctcgaggtgctg
agccgctacggctcgggcgaggagggcgcgaccctcgacaggctgggcggcgaggcgtgg
cagcgccgcaaggcgcggatgaaggagcggatccgcgagatcgcgggcgagctcatcgcc
accgccgcgctgcgtgccacccgcggcgccgacatcgctgagcccgatcatggcggctac
ccggcctttgtcgaccgcttcccctatgaggaaaccgacgatcaggaccgcgcgatcggc
gacgtgctgtcggacctcggcgccggccgcccgatggaccggctggtcgtgggcgatgtg
ggcttcggcaagaccgaggtggcgctgcgtgccgccttcgtcgcggcgatggccggcatg
caggtggcggtcgtgtgccccaccaccctgctcgcccgccagcattacaacaacttcaag
gcgcggttcgaaggcttcccgctggaaatcggccgcctctcccgcctcgtcacagcgacc
gagaccaagaaggtcaaggaaggcctcgccgccggtacgatcgacgtggtggtgggcacc
catgcggtgctgtccaagacgatcgacttcaagcggctcggcctcgtcatcgtcgacgag
gaacagcgattcggcgtgactcacaaggagcggctgaaggcgctcaagacggacgtccac
gtgctcaccctcaccgccacgccgatcccgcgcacgctgcagatggcgatgagcggcttg
cgcgaactttcggtcatccagaccccgccggtcgatcgtctggcggtgcgcacctatgtg
atgccgtgggatccggtcgtcctgcgcgaggcgctgctccgcgagcattatcgcggcggt
cagagctatttcgtcacgccgcgcatcgccgacctgcccgagatcgaggagttcctgcgc
agcgaggtgcccgaaatccgctatgtcgtcgcgcatggccagatggcgccgaccgaagtc
gaggagcggatgtccgccttttacgacaaaaagttcgaggtgctggtctcgaccaccatc
gtcgaaagcgggctcgacattcccagcgcgaacacgctgatcatcaatcgcgccgacaag
ttcggccttgcgcagctctaccagttgcgcggccgcgtcggccgctcgaagacacgcgcc
tacgcctatatgaccaccccgcccgagcggcagatgaccgaggcggcggagaagcggctc
aaggtcctttccgacctcgagagcctgggtgcaggcttccagctggccagccacgatctc
gacatccgcggcgccggcaatctgctgggggacgaacagtcgggccacatcaaggaagtc
ggctacgaactctaccagtcgatgctggaagaggcgatcctggaagccaagtccgggggc
ctgcgcgacgatgcgcggccgaaggacctgtcgccgcagatcacggtcgatgcgccgatc
atgatccccgaggattacgtgcccgatctcgatctgcgcatgggcctctaccgccgcctc
aacgaggtggaggaaaccgacggcatcgaaagcttcgctgcggagctgatcgaccgcttc
ggcaagctgcccgagccgaccgagaacctgctgcgcctgatcgagaccaagctcaacgcc
aagcgcgcctgcatcgccaagctggacctgggacccaagggcgcgctggtcaccttccac
aacgaccagttccccaatcccgaggggctgatcgcctatgtcgaaaagctgggcgaaacc
gcccgtctgcggcccgacatgaagctcgtcatcaaccgcgcctgggcgaacccggcggcg
cggctgcacggcgcgctgcagctgtcgcgggggctcgccaaggcggcgggctga
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integrated database retrieval system
