Sphingomonas sp. R1: OIM94_04875
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Entry
OIM94_04875 CDS
T11062
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sprr Sphingomonas sp. R1
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_04875 (addB)
Enzymes [BR:
sprr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OIM94_04875 (addB)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OIM94_04875 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
HTH_62
Motif
Other DBs
NCBI-ProteinID:
UYY78340
LinkDB
All DBs
Position
complement(1015747..1018686)
Genome browser
AA seq
979 aa
AA seq
DB search
MPHALHLFTIPPHRAFADALAIGLIRRFGSDPLRLARGVVLLPNNRAKRAMQDAFVRESG
GGLLLPRLVAIGDPELDEAVFETVGDAEPVPPAVDPLQRRMILARLLQAHDARLDAAEAV
RLAGDLGTTLDQLLVEEIAPQRLRELELGPELSAHWARSLALFEIVLTRWPAELAALGRV
DLPERRRRLLDRVSARWRTAPPAGFVCAAGITTAAPAIARLLRVVAGLPEGMVVLPGLAT
AMDDAEWNLLGPHAADPVTGRRRRNLETHPQFHLKLLLERMGVGRSEFQQWRVTSELDAP
PARSKAIASAMQPPELTHKWTSLPGGERRLDGVRALELATPAEEAQAIALALREALETPA
RTAALVTPDRALARRVAAHCARWGITIDDSAGQPLSLTPPGTLLLALADAAAQAFAPMPL
LTLLKHPLVQPGARADWLDGARALDLVLRGPRPAPGLAGVDGHLAEQSGRDGALRRAAAR
WWEGARELVAPLEAVFAGGAQPLPRLVAALREAAQALGGDMLWSREDGRAAALLLDDLER
EAAHGPALAEPDSLAPMLRTLLDEVAVRPPQGGHPRLAILGLIEARLHSADLMILGGLNE
GIWPGLPAPDPWLAPRIRTELGLPGLERRIGVSAHDLAIGLGAKDVLLTRARRDASAPTI
ASRFWLRLEALSGGLDRAGDLAGWMAAMDAPLAFAPVARPEPAPPAATRPRVISVTEVDR
LKADPYAFYARRMLRLLPLDPVDADPSAAWRGTAVHDVLQKWFEEDACRPDLLRARAEAM
LADTRTHPLIRALWQPRLIEAIDWIAGELAEQGARGRSVLAVERDGAIDVAGVRLRGKFD
RVDRLADGTLAIVDYKTGQPPSTRAVKAGFSLQLGLLGLIAERGGFEGIEGTARCFEYWS
MARNPKSGGFGFVDSPVDPKKREPVPAEDFVAIAAEHFADAAGEWLTGDRPFTAKLVPEY
APYAEYDQLMRRDEWYGRD
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacgccctccacctcttcaccatcccgccccatcgcgcctttgccgatgcgctg
gcgatcgggctgatccgccgcttcggcagcgatccgctgcggctggcacgcggcgtggtg
ctgctgccgaacaaccgcgccaagcgggcgatgcaggatgcctttgtgcgcgagagcggc
ggcgggttgctccttccccggctggtcgcgatcggggatccggagctcgacgaggcggta
ttcgagaccgtcggcgatgccgagccggtgccgcccgcggtcgatcccctgcagcggcgg
atgatcctcgcccggctgctccaggcgcacgacgcgcggctggatgcggcggaggcggtg
cggctggcgggcgacctcggcaccacgctcgaccagttgctggtcgaggaaatcgccccg
cagcgcctgcgcgagctggaactggggcccgagctctccgcgcattgggcacgctcgctg
gcgctgttcgagatcgtgctgacccgctggcccgccgaactcgccgccttgggcagggtc
gatctgcccgagcggcggcggcgcctgcttgatcgcgtgtccgcgcgctggaggacggcg
ccgcccgccgggttcgtctgcgccgccggcattaccaccgccgcccccgccattgcccgc
ctgctgcgtgtcgtggcagggcttccggaggggatggtggttctgcccgggctcgcaacc
gcgatggacgacgccgaatggaacctgctgggcccccacgcggcggacccggtgaccggc
cggcgccgccgcaacctagaaacccatccgcaattccatctcaagctgctgctcgagcgg
atgggggtcggccgcagcgaatttcagcaatggcgggtgaccagcgaactcgatgcgccg
cccgcgcggagcaaggcgatcgcatcggcgatgcagccgcccgagctgactcacaaatgg
accagcctgccgggtggcgagcgccggctggacggtgtccgcgcgctcgagctggcaacg
ccggccgaggaggcgcaggcgatcgcgctggcactccgcgaggcgctggagaccccggcg
cgcaccgccgcgctggtcacgcccgatcgcgcgctggcgcgccgggtggcggcgcactgc
gcccgctgggggatcacgatcgacgactccgccggccagcctttgtcattgacccccccg
gggacgctgctgctggcgctggcggacgcggccgcgcaggcgtttgcaccgatgccgctg
ctgaccctgctcaagcatccgctggtgcagccgggggcgcgtgccgactggctcgatggt
gcacgggcgctcgatctcgtcctgcgcggcccgcgcccggcaccgggcctggcgggcgtg
gatggccatctggcggagcagtccgggcgcgacggcgccctgcgccgcgccgccgcgcgc
tggtgggagggcgcgcgagagctggtcgcgccgctggaggcggtgttcgccggtggcgcc
cagccgctcccccggctggtcgcagcgctgcgcgaggcggcacaggccctgggcggcgac
atgctgtggagccgcgaggacggacgcgcggcggccctgctgctcgacgatcttgagcgc
gaggcggcccatggcccggcgcttgcggagccggacagcctcgcaccgatgctccggacg
ctgctggacgaagtcgccgtgcggccgccgcagggcgggcatccgcggctcgccatcctc
ggcctcatcgaggcgcggctgcacagcgccgatctgatgatcctcggcgggctcaacgag
ggcatctggccgggcctgcccgcacccgatccgtggctggcgccgcgcatccggacggag
ctggggctgccggggctggagcgacggatcggcgtatccgcacatgatctcgccatcggc
ctcggcgccaaagacgtactgctcacccgcgcccgccgcgatgccagcgccccgacgatc
gcgtcgagattctggcttcggctggaggcgctgtcggggggcttggaccgggcaggcgat
cttgccggctggatggccgcgatggatgcgccgctggctttcgcgccggtggctcgaccg
gagccggcgccgcccgcggcaacgcggccaagggtcatctcggtgacggaggtcgaccgg
ctcaaggcggacccgtacgccttctacgcccggcggatgctgcgcctgttgccgctcgat
ccggtggatgccgatcccagcgcggcgtggcggggaacagcggtgcatgacgtgctgcag
aaatggttcgaggaggatgcctgccgtcccgacctgctgcgcgcgcgcgccgaggccatg
ctggcggacacgcgcacccatccgctgatccgcgcactctggcagccccggctgatcgag
gcgatcgactggatcgccggcgagttggccgagcaaggcgccaggggccgctcggtgctc
gccgtggagcgcgatggcgcgattgacgtcgccggggtgcggctgcgcggcaagttcgat
cgcgtcgaccggctggctgacggtacgctggcgatagtcgactacaagaccgggcagccg
cccagtacccgcgcggtgaaggccggattcagccttcagctcggcttgctggggctgatc
gcggagcgggggggcttcgaggggatcgaaggcaccgcgcgctgcttcgaatattggtcg
atggcccgcaatccgaagagcggcggcttcggcttcgtcgactcgcccgtggatccgaag
aagcgcgagcccgtgccggccgaggatttcgtcgcgatcgccgcggagcattttgccgac
gcggcaggcgagtggctgaccggcgatcgcccgttcacggccaagctggtgccggaatat
gcaccctatgccgaatatgaccaactgatgcgccgggacgaatggtatggccgtgattga
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