Sphingomonas sp. R1: OIM94_05090
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Entry
OIM94_05090 CDS
T11062
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr00300
Lysine biosynthesis
sprr00470
D-Amino acid metabolism
sprr01100
Metabolic pathways
sprr01110
Biosynthesis of secondary metabolites
sprr01120
Microbial metabolism in diverse environments
sprr01230
Biosynthesis of amino acids
Module
sprr_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
OIM94_05090
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
OIM94_05090
Enzymes [BR:
sprr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
OIM94_05090
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
UYY78380
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Position
complement(1065411..1066622)
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AA seq
403 aa
AA seq
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MNAKPIGPIPPHYGGQAALEIAGRSATDWAGAGTPLYLYDLAAVQARIARFRAAMPAQVA
LHYAIKANPFSPLIAAIAPQVDGIDVASAGEMAKALAVLPATTISFAGPGKRDAELEAAI
RAGVTLNLESEGEAERALAIGERTGIAPRLAVRVNPDFELRGSGMKMGGRASPFGIDAAR
VPVLIRRLIAAGADWRGFHIYAGSQALSAEAVIETQSATIGLAARLADAAGARPPLVNLG
GGFGIPYFPGDASLDVEAVGAALASELERLDTYYAIELGRWLVGEAGIYLARVIDRKESQ
GETFLVVDGGLNHHLAATGNFGTVVRRNYPVAVAHRMHDAAEEVVTIVGPLCTPLDRLAD
RVALPRAEVGDLIAIFASGAYGASASPQGFLGHPPVRELLAGN
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgaagcccatcggccccattcctccccactatggcggccaggccgcactggag
attgcaggccggtcagccactgactgggcaggggccggaacgccgctctatctctatgat
ctggctgccgtgcaggcgcggatcgcgcggtttcgcgcggccatgccggcgcaggtggcg
ctccattatgcgatcaaggccaaccccttttcgccattgatcgccgccatcgcgccccag
gtggacgggatcgacgtcgcctcggcgggcgagatggcaaaggcactcgccgtcctgccg
gcgacgacgatcagcttcgccgggcccggcaagcgcgacgcggagctggaggcggcgatc
cgcgccggcgtcacgctcaatctcgagtccgaaggcgaggccgagcgcgcgctggcgatc
ggtgagcggaccggcattgccccgcgcctcgccgtacgggtcaacccggacttcgagctg
cgcggatcgggcatgaagatgggcgggcgggcttcgcccttcgggatcgatgccgcgcgc
gtgccggtgctgatccggcggctgatcgcggcgggtgcggactggcgcggatttcacatc
tatgcggggtcgcaggcgctgtcggccgaggcggtgatcgagacgcagtcggcaaccatc
ggcctcgccgcgcggctggccgatgcggcaggcgcgcgaccaccgctggtcaatctcggc
ggcggtttcgggattccctattttcccggcgacgcgtcgctcgacgtggaagcggtgggc
gcggcgctggcgagcgagctcgaacggcttgacacctactatgcgatcgaactcggccgc
tggctggtgggcgaggcgggcatctatctggcgcgcgtgatcgaccgcaaggaaagccag
ggcgaaacctttctggtggtcgatggcggtctcaaccatcatctcgccgccaccggcaat
ttcggcactgtcgtccgtcgaaactaccccgtggcggttgcgcatcgcatgcacgacgcg
gcggaagaagtggtcaccatcgtgggaccgctgtgcacgccgctggaccggctggccgac
cgcgtggcgctcccccgcgccgaggtgggcgacctgatcgcgatctttgcatcgggtgcc
tatggcgccagcgccagcccgcaggggttcctcggccacccgccggttcgcgagcttctg
gcagggaactga
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