Sphingomonas sp. R1: OIM94_05665
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Entry
OIM94_05665 CDS
T11062
Name
(GenBank) rhamnogalacturonan lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sprr Sphingomonas sp. R1
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
OIM94_05665
Enzymes [BR:
sprr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
OIM94_05665
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Gene cluster
GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP_3
FG-GAP
PQQ
EF-hand_5
Motif
Other DBs
NCBI-ProteinID:
UYY78486
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Position
1177572..1179452
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AA seq
626 aa
AA seq
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MKRSTRTICGISVAALAAVLAGAAPATAQQIERLDRGVVAVPAIDGGVLVSWRLLATDGA
STAFNLYRNGQRLNAQPLSGPTNFVDTGGGASDTYAIKVIANGVEQDRAFSASVWANGAG
VIPLDKPADGVVTGPNGTSSSYSYEANDASVGDLDGDGKYEIVLKWEPTNAKDNSQSGLT
GPVFLDAYTLAGRKLWRINLGRNIRAGAHYTQFQVFDYDGDGRAEVVAKTADGTVDGQGR
VIGDANADWRNANGYVLAGPEFLTVFQGTTGRALSTVNYVVGRHPDTQNPTPAQINAIWG
DNYGNRVDRFLAGTAYLDGQRPSIIMARGYYTRTAIAAWDFRNGQLTQRWLFDSGVTSAA
NPTTGQGNHNLSIADVDGDGRDEILYGSLALDDNGTALWSARSSTGQKLGHGDAMHVGDL
DPDRPGLEKFGVHESPGSNGGIGTAMLDARTGAVLWSATASSDNGRGLAADIDPRYRGSE
NWSSRSQLRSATGQVIANTAKPGSTNFAIYWDGDTLRELLDNVTISKWDWTTQTTRVLMT
AADSKSNNSTKATPTLQADILGDWREEVILPSADSTKLRIFATPYPTTYKLTTLMHDRVY
REGIAWQNTSYNQPPHTSYYLPDAVR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgttcgacacggactatctgcggcatttcagttgcggcgcttgcagccgtgctg
gccggcgccgcgcccgccaccgcacagcagatcgagcggctggaccgcggcgtcgtcgcc
gttcccgccatcgatggcggcgtgctggtcagctggcgccttcttgccaccgacggcgcc
tccacggccttcaatctgtaccgcaacggccagcggctcaacgcccagccgctgtccggc
cccaccaacttcgtcgataccggcggcggggcaagcgacacctatgcgatcaaggtgatc
gcgaacggcgtcgagcaggatcgcgccttctccgcctcggtctgggccaatggcgcgggc
gtgatcccgctcgacaagcctgccgacggcgtcgtcacggggccgaacggcacctcgagc
agctacagctacgaggccaatgacgcgagcgtcggcgatctcgatggcgatgggaagtac
gagatcgtgctcaagtgggagccgaccaacgccaaggacaacagccagagcggcctgacg
ggacccgtcttcctcgacgcctacacgctcgccgggcgcaagctgtggcgcatcaatctc
ggccgcaacattcgcgccggcgcacactacacccagttccaggtgttcgactatgatggc
gacggccgcgccgaggtggtggccaagaccgccgacggcacggttgacggccagggtcgc
gtgatcggcgacgcaaatgccgactggcgcaacgccaatggctatgtcctggcgggcccg
gaattcctgaccgtcttccagggcaccaccggccgggcgctctccaccgtcaactatgtc
gtggggcggcatccggacacgcagaaccccacgcctgcccagatcaacgcgatctggggc
gacaattacggcaaccgggtcgaccggttcctcgccggcacggcctatctcgatggtcag
cgccccagcatcatcatggcacgcggctattatacccgtaccgcgatcgccgcctgggac
ttccgcaacggccaactgacccagcgctggctgttcgacagcggcgtcaccagcgcggcc
aatcccaccaccggccagggcaaccataatctgagcatcgccgatgtcgacggcgacgga
cgcgacgagatcctctacggctcgctcgccctcgatgacaacggcaccgcgctgtggtcc
gcgcgctcctcgaccggccagaagctcgggcatggcgatgcgatgcacgtcggcgatctg
gatccggatcgcccaggcctggaaaagttcggcgtgcatgaatcgcccggctcgaacggc
gggatcggcacggcgatgctcgatgcccgaacgggggcggtgctgtggtcggctacggcc
agttcggacaatggccgcggcctcgccgccgatatcgatccgcgataccgtggtagcgag
aactggtcatcgcgcagccagctgcgcagcgccaccgggcaggtcatcgcgaacaccgcc
aagccgggatcgaccaatttcgcgatctactgggacggcgacacgttgcgcgagcttctc
gacaacgtgacgatcagcaagtgggattggaccacccagaccacccgcgtgctgatgacg
gcggcggattccaagtcgaacaactcgaccaaggccacgcccacgctgcaggcggatatt
cttggcgactggcgcgaggaggtgatcctgccgagtgccgacagcaccaagctgcggatc
ttcgccacgccctatccgaccacctacaagctcaccacattgatgcacgaccgcgtctat
cgcgaaggcatcgcctggcaaaacacgtcctacaaccagccgccgcataccagctattat
ctgcccgacgcggtgcgctga
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