Sphingomonas sp. R1: OIM94_07060
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Entry
OIM94_07060 CDS
T11062
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OIM94_07060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprr03021
]
OIM94_07060 (rpoC)
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_07060 (rpoC)
Enzymes [BR:
sprr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OIM94_07060 (rpoC)
Transcription machinery [BR:
sprr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OIM94_07060 (rpoC)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OIM94_07060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UYY78734
LinkDB
All DBs
Position
1459056..1463339
Genome browser
AA seq
1427 aa
AA seq
DB search
MNELTNFANPLAKPETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKIMLMDLDLEGERKELLEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYITMEKEGEPGEGMLLADMAEVHQALNA
GAVTLHSKITSRVPQTDENGKQYLKRYQTTPGRMLLGECLPHSHKVPFDVVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMSLGFRHAFKAGISFGKDDMIIPDAKVGLVDETKALV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDQVAAAMMDEIKAVKKDPETGRQKPDNAIYI
MAHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVLEDDCGTERALEMKAIVQGGSVIASLGERILGRTT
AEDIVDPKTNQVVIPIGTLLDEPMIAQIEALSTPAVKIRSPLVCEAKLGVCAKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGKAEFRDLRL
IEDQRGRRVVLSRSGEIAIMDMDGRELAVHKIPYGAYVMFDDGHLVSAGDRMAEWDPFTM
PVITETGGVVKYQDIIEGKTMTEQVDEATGIAQRVVTEFRGAGKKEDLRPRMTLTGENAA
EAARYMLAPGAVISVEDGATVQGGDVLARVARESAKTRDITGGLPRVAELFEARKPKENA
IIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNLIGGS
PDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTL
LAGEQVDRDEMDEHNEKLQPGQQPAMGKPILLGITKASLQTRSFISAASFQETTRVLTEA
AVQGKKDTLLGLKENVIVGRLIPAGTGAGMGRLRVAATSRDAALRVAQRKMQEASLIAPA
SAKEEHAAELARSPRDAAGTGDDPLAQVAPSGHGTDADAGEYLNEAE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacttaccaacttcgcgaacccgctcgccaagccggaaaccttcgaccagatc
cagatcgggatcgcctcgccggaccgtatccgcagctggtcgttcggcgagatcaagaag
cccgagacgatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggcgtggaagtgaccgtctcgaaggtccgccgcgag
cgcatgggccatatcgagctggctgccccggttgcccacatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctctac
ttcgagagctacatcgtcaccgagccgggcctcaccccgctcgagaagtttcagctcctc
accgaggacgagctgctcgacgcgcaggatgagtatggcgaggacgccttctccgccggc
atcggcgcggaagcggtcaagatcatgctcatggatctcgacctcgagggcgagcgcaag
gagcttctggaagagctggcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cgcctcaaggtcgtcgagagcttcatcgattccggcaaccgcccggaatggatgatcctg
gacgtcgtgccggtgatcccgcccgaactgcgcccgctggtgccgctggacggcggccgc
ttcgcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgcctc
aagcgcctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgacgcgctgttcgacaacggccgccgcggccgcaccatcaccggtgcg
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctcgacgccaagggtctgtccatgaccctgaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaagtgatccgcgagcac
ccggttctcctcaaccgcgcgccgacgctccaccgtctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggcgatccagctccacccgctggtctgctcggcgttcaacgcc
gacttcgacggtgaccagatggccgtccacgttcccctgagcctcgaggcccagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgagccccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggtctctattacatcaccatggagaaggaaggc
gagccgggcgaaggcatgctgctggccgacatggcggaggtccaccaggccctcaacgcc
ggcgcggtgacgctgcactcgaagatcaccagccgcgttccgcagaccgacgagaacggc
aagcagtacctcaagcgctaccagaccaccccgggccgcatgctgctcggcgagtgcctg
ccgcacagccacaaggtgccgttcgacgtcgtcaaccgcctgctcaccaagaaggacgtg
ggcgacgtgatcgacgaggtctatcgtcacaccggccagaaggagaccgtgctgttcgcc
gacgcgatcatgtcgctgggcttccgccacgcgttcaaggccggcatctcgttcggcaag
gacgacatgatcattccggacgccaaggtgggtctggtcgacgagaccaaggcgctggtg
aaggacttcgagcagcagtatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggagccgttgcggtgaccaggtggccgcagcgatgatggacgagatc
aaggcggttaagaaggaccccgagaccggccgccagaagcccgacaacgccatctacatc
atggcgcactcgggcgcccgtggttcggcggcgcagatcaagcagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggtctgaccgtccttgaatacttcaactcgacccacggtgctcgtaagggcctcgcg
gacaccgcgctcaagaccgcgaactcgggctacctcacccgtcgtctggtcgacgtgtcg
caggactgcgtcgtcctcgaggacgattgcggcaccgagcgcgcgctggagatgaaggcg
atcgtgcagggcggttcggtgatcgcctcgctcggcgagcgcatcctgggccgcaccacg
gccgaggacatcgtcgatccgaagaccaaccaggtcgtgatcccgatcggcaccctgctc
gacgagccgatgatcgcgcagatcgaggcgctcagcacgccggcggtgaagatccgttcg
ccgctggtctgcgaggccaagctcggcgtgtgcgccaagtgctacgggcgtgacctcgcc
cgcggtaccccggtgaacatcggcgaagcggtgggcgtcatcgcggcgcagtcgatcggc
gagccgggcacgcagctgaccatgcgtaccttccacatcggcggtgcggcacagctcaac
gagcagtcgaacctggaagccccggtggacggcaaggccgagttccgcgacctgcgcctg
atcgaggatcagcgcggccgtcgcgtggtgctcagccgctcgggcgagatcgcgatcatg
gacatggatggccgcgagctggccgtgcacaagatcccgtacggcgcctatgtgatgttc
gacgacggccatctggtcagcgccggcgatcgcatggccgagtgggatccgttcaccatg
ccggtgatcaccgaaaccggtggtgtcgtgaagtatcaggacatcatcgaaggcaagacc
atgacggagcaggtcgacgaagcgacgggtatcgcccagcgcgtcgtcaccgaattccgc
ggtgcgggcaagaaggaggacctgcgtcctcgcatgaccctcaccggcgagaatgccgcc
gaagccgcccgctacatgctggcgccgggcgcggtgatctcggtcgaggatggtgccacg
gtgcagggcggtgacgttctcgctcgtgtggcgcgcgagtccgccaagacccgcgacatc
accggcggtctgccgcgcgtcgccgagctgttcgaagcgcgcaagcccaaggaaaatgcc
atcatcgcgaaggtctcgggccgcgtggtgttcggcaaggactataaggccaagcgcaag
atcggcatccagccggaggacggcggcgaggtcgtggagtatctggtcccgaagtcgaag
gtgatcgacgttcaggaaggcgactacgtcaagcgtggcgacaacctgatcggcggttcg
ccggatccgcacgacattctggaagtgctcggcatcgagcctctggccgaatatctggtc
agcgaaatccaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggtcgagatcaccgacggcggcgacaccacgctg
ctggcgggcgaacaggtcgatcgcgacgagatggacgagcataacgagaagctccagccg
ggccagcagcccgcgatgggcaagccgatcctgctcggcatcaccaaggcgtcgctgcag
acccgcagcttcatctcggccgcgtcgttccaggagaccacccgcgtgctcaccgaagcc
gcggtgcagggcaagaaggacacgctgctcggcctgaaggagaatgtgatcgtcggccgc
ctgatccccgccggtaccggtgcgggcatgggtcgcctgcgggtcgctgccacctcgcgc
gatgcggcgctccgcgtcgcccagcgcaagatgcaggaagcctcgctcatcgctccggcg
agcgcgaaggaagagcatgcggcggaactggcccgcagcccgcgcgatgcggccggcacc
ggggatgatcccctggcgcaggtggcgccctcgggccacggcaccgacgcggatgccggc
gagtatctgaacgaggcggagtga
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integrated database retrieval system
