Sphingomonas sp. R1: OIM94_08665
Help
Entry
OIM94_08665 CDS
T11062
Name
(GenBank) type I secretion system permease/ATPase
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
sprr Sphingomonas sp. R1
Pathway
sprr02010
ABC transporters
sprr03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
OIM94_08665
03070 Bacterial secretion system
OIM94_08665
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sprr02000
]
OIM94_08665
02044 Secretion system [BR:
sprr02044
]
OIM94_08665
Transporters [BR:
sprr02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
OIM94_08665
Secretion system [BR:
sprr02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
OIM94_08665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
AAA_16
AAA_18
DUF87
AAA_22
AAA_29
SbcC_Walker_B
AAA_33
AAA_25
Zeta_toxin
RsgA_GTPase
AAA_28
AAA_21
Motif
Other DBs
NCBI-ProteinID:
UYY79249
LinkDB
All DBs
Position
complement(1791440..1793611)
Genome browser
AA seq
723 aa
AA seq
DB search
MQAQLQGAFAAQAAAEREGELRESGLVALSLLLGVHNIAVTPEQLRHMLGHAEGASVDDL
ILLAKRQQGVRAKAVDVPRGGLARQPLPAIADGPEGWFVIGGLTEHGVIIQRPGHAPEQV
DREGLDALWSGTLVLLTTRAVAGQALRFGFSWFAAQFQRYRRLFLEVLGITLALNLLGLA
APLLFQSVIDKVLVHNSMSTLSVLAFAFLAVSVWEVALGWIRTRLFTETTQKIDVELGAR
LFHHLLALPLGYFEKRRVGDTVTRVRQLETIREFLTNASLTVMVDPLFTVVFLGAMLFYS
PMLFGVVIVSLVAYAMVSFGVAGPLRTRVEDKFEKSSASNALLVESVSGIHTIKATAVEP
HWQNRWERQLAAYTASSQRLINVANTGSQAIELISKLSFAAILFFGAKAVIGGAMSVGAL
VAFNMFAQRVSGPVIRMAQLWQDFQQVRIAIERLGDVLNHPAEPRPASAATLPVLRGAIR
FENVTFRYAEDQPPVLSDITLDIPAGTSLGIVGSSGSGKSTLAKLLQRLNTPDLGRVLVD
EVDVAQLDPAWLRRQIGVVLQENLLFSRSIRENIALSNPAMPFEHVVAAATLAGAHDFIL
RQPRGYDTEIVERGVNLSGGQRQRLAIARALVGNPRILVFDEATSALDAESEELIQNNLR
AISAGRTLVIIAHRLSAVRACDRIITLEQGRIVESGRHDELLRLGGRYADLHRRQSGYGE
IAA
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcccagctccagggcgcgttcgccgcccaggctgccgccgagcgcgagggcgaa
ttgcgcgaatccgggcttgtggcgctgtcgctgctgctcggcgtccacaacatcgccgtc
acccccgaacagctgcggcacatgctgggccatgccgagggtgccagcgtcgacgacctg
atcctgctcgccaagcgccagcagggcgtgcgcgccaaggcggtggacgtgccgcgcggc
ggtctggcccgccagccgctgccggccatcgccgacggcccggagggctggttcgtgatc
ggtggcctgaccgagcatggcgtgatcatccagcgtcccggccacgcccccgaacaggtc
gaccgcgaggggctggatgcgctgtggtccggcacgctcgtgctgctgacgacgcgcgcc
gtggccggccaggcgctgcgattcggtttctcctggttcgccgcacagttccagcggtat
cgcaggctgtttctcgaggtgctgggcatcaccctggcgctcaacctgctcggcctcgcg
gcgccgctgctcttccagagcgtgatcgacaaggtgctggtccacaacagcatgagcacg
ctgagcgtgctcgccttcgccttcctcgccgtgtcggtctgggaggtggcgctgggctgg
atccgcacgcgcctgttcaccgagacgacgcagaagatcgacgtcgagctgggcgcgcgg
ctgttccaccatctgctggcgctgccgctcggctatttcgaaaagcggcgggtgggcgac
accgtcacccgggtccgccagctcgagaccatccgcgaattcctcaccaatgcgtcgctg
acggtgatggtcgatccgctgttcacggtcgtgttcctcggcgcgatgctgttctactcg
ccgatgctgttcggcgtcgtgatcgtgtcgctggtcgcctatgcgatggtctcgttcggc
gtcgcgggcccgctgcgcacgcgtgtcgaggacaagttcgagaagagctccgccagcaac
gcgctgctcgtcgagagcgtctccggcatccacaccatcaaggcgaccgcggtcgaaccg
cactggcagaatcgctgggaacgccagctcgccgcctataccgcctcgtcgcagcggctg
atcaacgtcgccaacaccggcagccaggcgatcgagctgatctccaagctgagcttcgcg
gcgatcctgttcttcggcgccaaggccgtgatcggtggcgcgatgagcgtcggcgcgctc
gtggcgttcaacatgttcgcccagcgcgtttccggccccgtgatccgcatggcccagctg
tggcaggacttccagcaggtccgcatcgcgatcgagcgcctcggcgacgtgctcaaccat
ccggcggagccgcggccggcctccgccgcgacgctgccggtgctgcgcggcgcgatccgc
ttcgaaaacgtgaccttccgctatgccgaggaccagccgccggtgctgagcgacatcacg
ctcgacatccccgccggcacgtcgcttggcatcgtcggctcctcggggtcgggcaagtcg
acgctggccaagctgctgcagcgcctcaacacccccgatctgggccgcgtgctggtcgac
gaggtggatgtggcccagctcgatcccgcctggctgcgccggcagatcggcgtcgtgctg
caggaaaatctgctgttcagccgctcgatccgcgagaacattgcgctgtccaacccggcg
atgccgttcgagcatgtcgtggcggcggcgacgctggcgggtgcgcatgatttcatcctg
cgtcagccgcgcggctatgacaccgagatcgtcgagcgcggcgtcaacctgtcgggcggc
cagcgtcagcggctcgccatcgcccgcgcgctggtcggcaatccgcgcatcctggtgttc
gacgaggcgacctccgcgctggatgccgagagcgaggagctgatccagaacaatctgcgc
gccatctcggcgggccgcacgctggtgatcatcgcccaccgcctgtccgcggtacgcgcc
tgcgatcggatcatcacgctggagcagggccgcatcgtcgagagcggccggcatgacgaa
ctgctacgcctgggcggccgctatgccgacctgcaccgccgccaaagcggctatggggag
attgccgcatga
DBGET
integrated database retrieval system
