Sphingomonas sp. R1: OIM94_09335
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Entry
OIM94_09335 CDS
T11062
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIM94_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprr03019
]
OIM94_09335
03009 Ribosome biogenesis [BR:
sprr03009
]
OIM94_09335
Enzymes [BR:
sprr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OIM94_09335
Messenger RNA biogenesis [BR:
sprr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OIM94_09335
Ribosome biogenesis [BR:
sprr03009
]
Prokaryotic type
rRNA helicases
OIM94_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UYY79162
LinkDB
All DBs
Position
1910989..1912707
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AA seq
572 aa
AA seq
DB search
MSISNLPTRLAEALEQRGYSTLTPVQSAVLEDQAAGRDLIVSAQTGSGKTVAFGLAMAPE
LLAGEETLPPAGAPLALIIAPTRELALQVSRELIWLYSPAGARIATCVGGMDASKERRTL
NHGAHIVVGTPGRLRDHLERGALDLSSLRVAVLDEADEMLDMGFREELEAILDATPEDRR
TLLFSATMPRPIVALAKRYQRNAFQITTKSDDRGHGDISYQAVTVAPADIEHVVINLLRL
HEAETAILFCATRDNVRHLHASLMERGFAAVALSGEHSQSERNHALQALRDRRARVCVAT
DVAARGIDLPTLTLVVHVELPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVEQMLH
GARIPAVWIDAPTPEQIRAADRERLIAALLQPIETDEEDIALAERLLAEKTPAEIAAALV
RAHRSQLPEPEELIEATPEARRAAQQERHRPGFDDTVWFRMDIGRRQNADPRWILPLICR
RGHITRNEVGAIRIAANETHFQIPAPLAAKFSAAVDKFARTAGDDDDGIRIERATDAPQP
GARADGPVRRGPPNRSNANGKPGGFRKGPPRR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttcgaatctaccgacgcgcctcgccgaggcgctggaacagcgtggctattcc
acgctgacccccgttcagtccgccgtcctggaagaccaggctgcgggccgcgaccttatc
gtttccgcccagaccggctcgggcaagaccgtcgccttcggcctcgccatggcacccgaa
ctgctcgccggcgaagagacgctgccgcccgccggcgcgccgctggctctcatcatcgca
ccgacgcgtgagctggcgctgcaggtcagccgcgagctgatctggctctacagcccggcc
ggcgcgcgcattgccacctgtgtgggcggcatggacgcctccaaggagcgccgcacgctc
aaccacggcgcgcatatcgtcgtcggcacgccgggccgtctgcgcgaccatctcgagcgc
ggcgccctcgacctgtccagcctgcgcgttgcggtgctcgacgaggccgacgaaatgctc
gacatgggcttccgcgaagagctcgaagcgatcctcgacgcgacgccggaagaccgccgc
acgctgctgttctcggcgacgatgccgcgcccgatcgtggcgctggccaagcgctaccag
cgcaacgccttccagatcaccaccaagagcgatgaccgcggacacggcgacatcagctat
caggcggtcacggtcgcgccggccgatatcgaacatgtcgtgatcaacctgctgcgcctc
cacgaggcggaaacggcgatcctgttctgcgcgacccgcgacaatgtccgtcacctccat
gccagcctgatggagcgcggcttcgcggccgtggcgctgtcgggcgagcattcgcagtcc
gagcgcaaccatgcgctgcaggcgctgcgcgaccgccgtgcgcgcgtctgcgtcgccacc
gacgtcgccgcccgcggcatcgatctgccgacgctgacgctggtggtgcacgtcgaactg
ccgcgcgatgccgagacgctccagcaccgctcgggccgcaccggtcgcgcgggcaagaag
ggcaccgcggtcctgatcgtcccctatccgcgccgccgccgcgtcgagcagatgctgcac
ggtgcacgcattccggcggtgtggatcgacgcgcccacccccgagcagatccgcgcggca
gaccgcgaacgactgatcgccgcacttctccagccgatcgagacggatgaggaagacatc
gcactcgccgagcgcctgctcgccgagaagaccccggccgagatcgccgcggcgctcgtg
cgcgcgcaccgctcgcagctgcccgagcccgaagagctgatcgaagcgacgcccgaagca
cgccgcgcggcgcagcaggagcggcatcgccccggcttcgacgatacggtgtggttccgc
atggacatcggccgtcgccagaatgccgatccgcgctggatcctaccgctgatctgccgc
cgcgggcacatcacccgcaacgaagtcggcgcgatccgcatcgcggcgaacgagacccac
ttccagatcccggcaccgctggcggcgaagttctcggcagcggtcgacaagttcgcgcgc
accgccggcgacgatgacgacggcatccgcatcgagcgtgcgaccgatgcgccgcagccc
ggcgcacgtgccgacggcccggtgcgtcgcggtccgccgaaccgcagcaacgccaacggc
aagcccggcggcttccgcaagggcccgccgcgccgctaa
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