Sphingomonas sp. R1: OIM94_09545
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Entry
OIM94_09545 CDS
T11062
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr00020
Citrate cycle (TCA cycle)
sprr00190
Oxidative phosphorylation
sprr00650
Butanoate metabolism
sprr00720
Other carbon fixation pathways
sprr01100
Metabolic pathways
sprr01110
Biosynthesis of secondary metabolites
sprr01120
Microbial metabolism in diverse environments
sprr01200
Carbon metabolism
Module
sprr_M00009
Citrate cycle (TCA cycle, Krebs cycle)
sprr_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sprr_M00149
Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
OIM94_09545 (sdhA)
00650 Butanoate metabolism
OIM94_09545 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
OIM94_09545 (sdhA)
00720 Other carbon fixation pathways
OIM94_09545 (sdhA)
Enzymes [BR:
sprr01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
OIM94_09545 (sdhA)
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
GIDA
DAO
Thi4
Pyr_redox_2
HI0933_like
Motif
Other DBs
NCBI-ProteinID:
UYY75784
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All DBs
Position
1954598..1956400
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AA seq
600 aa
AA seq
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MSAAYKIIDHIYDTVVVGAGGSGLRAVMEVAQSGLKTACITKVFPTRSHTVAAQGGIAAS
LGNMGPDHWTWHMYDTVKGSDWLGDQDAIEYLTREAPAAVYELEHAGMPFSRTEEGKIYQ
RPFGGMMQNMGEGPPAQRTCAAADRTGHAMLHTLYQQSLKYDADFFIEYFALDLIMENGE
CRGVIALCMEDGSIHRFRSHAVVLATGGYGRVYQSATSAHTCTGDGNAMVLRAGLPLQDM
EFVQFHPTGIYGAGVLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRSMAME
IREGRGVGKEKDHIFLHLNHIDPKILAERLPGITETGKVFAGVDLTRQPLPVVPTVHYNM
GGIPTNYHGEVVHLKDGNPDAVVPGLFAVGEAACVSVHGANRLGSNSLIDLVVFGRATGK
RIVDILKPGTPHHPLPKDSEALALGRLDHFRNANGGTRTSQLRADMQKTMQRHCAVFRTE
ELMAEGVAHMDQVYKGLEDVAVSDRSLIWNTDLVETLELDNLLGQAMVTIRSAINRKESR
GAHMHEDFPERDDAGWMKHTIATFDGWGGKGGTTAIDYRPVHDYTLTDAIDYIKPKKRVY
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgcctacaagatcattgatcacatctatgacaccgtcgtcgtcggcgcaggg
ggctcgggcctccgcgcggtgatggaagtggcgcagtcgggcctcaagaccgcctgcatc
accaaggtgttccccacccgcagccacaccgtggcggcacagggcggcatcgccgccagc
ctcggcaatatgggtccggaccactggacctggcacatgtacgacaccgtcaagggctcc
gactggctcggcgaccaggacgcgatcgagtatctgacccgcgaggccccggccgcggtg
tacgagctcgaacatgccggcatgccgttcagccgcacggaagagggcaagatctatcag
cgcccgtttggcggcatgatgcagaacatgggcgaaggcccgcccgcgcagcgcacctgc
gccgcggcggatcgcaccggccatgcgatgctgcacacgctgtaccagcagagcctgaag
tacgacgcggacttcttcatcgaatatttcgcgctcgacctgatcatggaaaatggcgag
tgccgcggcgtgatcgcgctgtgcatggaagacggctcgatccaccgcttccgcagccat
gcggtggtgctggcgacgggcggctatggccgtgtctaccagtcggccacctcggcgcac
acctgcaccggcgacggcaacgcaatggtgctccgcgccggcctgccgctgcaggacatg
gagttcgtccagttccacccgaccggcatctacggcgcgggcgtgctgatcaccgagggt
gcgcgcggcgaaggcggctatctcaccaactccgagggtgagcgcttcatggagcgctat
gcgccctccgccaaggatctcgccagccgcgacgtcgtgtcgcgctcgatggcgatggaa
atccgcgaaggccgcggcgtgggcaaggagaaggaccatatcttccttcacctcaaccat
atcgacccgaagatcctggccgagcgcctgcccggcatcaccgagaccggcaaggtcttc
gccggcgtcgacctcacccgccagccgctgccggtggtgccgaccgtccactataatatg
ggcggcatcccgaccaactatcacggcgaagtcgtccatcttaaggacggcaacccggat
gcggtggtccccggcctgttcgcggtgggcgaagcggcctgcgtgtcggtgcacggcgcc
aaccgtctcggctccaactcactgatcgacctcgtggtgttcggccgcgcgaccggcaag
cggatcgtcgacatcctcaagccgggcaccccgcaccacccgctcccgaaggattcggaa
gcgctggcactgggtcgcctcgaccatttccgcaacgcgaacggcggcacccgcacgtcg
cagctgcgcgccgacatgcagaagacgatgcagcgccactgcgccgtgttccgcaccgag
gagctgatggccgagggcgtggcgcacatggaccaggtctataagggcctggaggacgtg
gcggtcagcgatcgctcgctgatctggaacaccgatctcgtcgagacgctggagctcgac
aacctgctcggccaggcgatggtgacgatccgcagcgcgatcaaccgcaaggaaagccgc
ggcgcgcacatgcacgaggatttccccgagcgcgacgacgccggctggatgaagcacacc
atcgcgacgttcgacggctggggcggcaagggcggcaccaccgcgatcgattaccgtccg
gtgcacgactacacgctcaccgacgcgatcgactatatcaagccgaagaagcgggtgtac
tga
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