Sphingomonas sp. R1: OIM94_11480
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Entry
OIM94_11480 CDS
T11062
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIM94_11480 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprr03019
]
OIM94_11480 (groL)
03110 Chaperones and folding catalysts [BR:
sprr03110
]
OIM94_11480 (groL)
03029 Mitochondrial biogenesis [BR:
sprr03029
]
OIM94_11480 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sprr04147
]
OIM94_11480 (groL)
Enzymes [BR:
sprr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
OIM94_11480 (groL)
Messenger RNA biogenesis [BR:
sprr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
OIM94_11480 (groL)
Chaperones and folding catalysts [BR:
sprr03110
]
Heat shock proteins
HSP60 / Chaperonin
OIM94_11480 (groL)
Mitochondrial biogenesis [BR:
sprr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
OIM94_11480 (groL)
Exosome [BR:
sprr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
OIM94_11480 (groL)
Exosomal proteins of other body fluids (saliva and urine)
OIM94_11480 (groL)
Exosomal proteins of breast cancer cells
OIM94_11480 (groL)
Exosomal proteins of colorectal cancer cells
OIM94_11480 (groL)
Exosomal proteins of bladder cancer cells
OIM94_11480 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Pho88
Motif
Other DBs
NCBI-ProteinID:
UYY76150
LinkDB
All DBs
Position
2398209..2399843
Genome browser
AA seq
544 aa
AA seq
DB search
MAAKDVKFSRDARERILRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVSVAKEI
ELKDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGI
DLAVAKVVEDVKARSKPVSGSQEVAQVGIISANGDREVGEKIAEAMEKVGKEGVITVEEA
KGLEFELDVVEGMQFDRGYLSPYFITNPEKMAVELSDPYILIHEKKLSNLQSMLPILEAV
VQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAVLTKGEV
ISEDLGIKLETVTLGMLGTAKRVTIDKDNTTIVDGAGEAESIKARTEQIRQQIEVTTSDY
DREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALL
YATKALEGLNGANEDQTRGIDIVRKSLTALVRQIAQNAGQDGAVVSGKLLDQTDTSFGFN
AATDTYENLVAAGVIDPTKVVRTALQNAASVAGLLITTEATIAELPEDKPAAPAMPGGMG
GMDF
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaaggacgtaaagttttcgcgcgacgctcgtgagcgcatcctgcgcggcgtc
gacatcctcgccgacgcggtgaaggtcacgctgggcccgaagggccgcaacgtcgtgatc
gagaagagcttcggcgcgccccgcatcaccaaggacggtgtgtcggtcgcgaaggaaatc
gagctcaaggacaagttcgagaacatgggcgcgcagatggtgcgcgaagtggcctcgaag
accaacgacatcgccggtgacggcacgaccaccgcgaccgttctggcgcaggcgatcgtc
cgcgagggcatgaagtcggtggccgccggcatgaacccgatggacctgaagcgcggcatc
gatctcgccgtcgccaaggtggtcgaggacgtgaaggcccgctcgaagcccgtctcgggt
tcgcaggaagtcgcccaggtcggcatcatctcggcgaacggcgaccgtgaagtcggcgag
aagatcgccgaggcgatggagaaggtcggcaaggaaggcgtgatcaccgtcgaagaggcg
aagggtctcgaattcgagctcgacgtcgtcgaaggcatgcagttcgatcgcggctatctc
tcgccctacttcatcaccaacccggagaagatggcggtcgagctcagcgatccgtacatc
ctgatccacgagaagaagctgtcgaacctgcagtcgatgctgccgatcctcgaggcggtc
gtgcagtcgggtcgtccgctgctgatcatcgccgaggacatcgaaggcgaagcgctggcg
accctggtcgtcaacaagctgcgcggcggcctcaaggtcgcagcggtcaaggcaccgggc
ttcggcgatcgtcgcaaggcgatgctggaagacatcgccgtcctcaccaagggtgaagtg
atcagcgaagacctcggcatcaagctcgagaccgtcacgctcggcatgctcggcaccgcc
aagcgcgtcaccatcgacaaggacaacaccaccatcgtcgatggcgccggtgaagccgag
tcgatcaaggcccgcaccgagcagatccgccagcagatcgaagtcaccaccagcgattac
gaccgcgagaagctccaggagcgtctcgccaagctcgccggcggcgtggccgtgatcaag
gtcggcggtgcgaccgaagtcgaggtgaaggagcgcaaggaccgcgtcgacgacgcgctg
cacgcgacccgcgcagccgttgaagaaggcatcgtccccggcggcggcacggccctgctg
tacgcgaccaaggctctcgaaggcctgaacggcgcgaacgaggaccagacccgcggcatc
gacatcgtccgcaagtcgctgaccgcgctggtgcgccagatcgcgcagaacgctggccag
gacggcgccgtcgtctcgggcaagctgctcgaccagaccgacacctcgttcggcttcaac
gccgcgaccgacacctacgagaacctcgtggctgccggcgtgatcgacccgaccaaggtg
gtgcgcaccgcactgcagaacgcggcttcggtcgccggcctgctgatcaccaccgaagcc
accattgccgagctgccggaagacaagcctgctgctccggcgatgccgggcggcatgggc
ggcatggacttctaa
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