Sphingomonas sp. R1: OIM94_11960
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Entry
OIM94_11960 CDS
T11062
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OIM94_11960 (rpoZ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sprr03021
]
OIM94_11960 (rpoZ)
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_11960 (rpoZ)
Enzymes [BR:
sprr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OIM94_11960 (rpoZ)
Transcription machinery [BR:
sprr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OIM94_11960 (rpoZ)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OIM94_11960 (rpoZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Motif
Other DBs
NCBI-ProteinID:
UYY76238
LinkDB
All DBs
Position
complement(2500263..2500607)
Genome browser
AA seq
114 aa
AA seq
DB search
MARVTVEDCVDKVPNRFDLVLFAAQRARQISGGADLTLDRDRDKNPVVALREIAEETVRP
DHLQEGVIASLQRVRIDDEDAPDEVGSIQAQAEALRLTAAAPPRNQNLGGDYEG
NT seq
345 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgtcacagtcgaggattgcgtcgacaaggttcccaaccggttcgacctggtg
ttgttcgccgcccagcgcgcgcggcagatctcgggcggtgccgatctcaccctcgatcgc
gatcgcgacaagaacccggtcgtcgcgctgcgcgagatcgcggaagaaaccgtgcgcccc
gatcatctgcaggaaggcgtgattgccagcctgcagcgcgtgcggatcgacgacgaggat
gcgccggacgaggtcggctcgatccaggcccaggccgaggcgctccgcctcaccgcggcg
gccccgccccgcaaccagaatctgggcggcgactacgagggctga
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