Sphingomonas sp. R1: OIM94_12100
Help
Entry
OIM94_12100 CDS
T11062
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sprr Sphingomonas sp. R1
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
OIM94_12100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprr03019
]
OIM94_12100
03009 Ribosome biogenesis [BR:
sprr03009
]
OIM94_12100
04131 Membrane trafficking [BR:
sprr04131
]
OIM94_12100
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sprr04147
]
OIM94_12100
Messenger RNA biogenesis [BR:
sprr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
OIM94_12100
Ribosome biogenesis [BR:
sprr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
OIM94_12100
Membrane trafficking [BR:
sprr04131
]
SNARE
SNARE associated proteins
Others
OIM94_12100
Autophagy
Aggrephagy
Other aggrephagy associated proteins
OIM94_12100
Exosome [BR:
sprr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
OIM94_12100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
AAA_22
CDC48_2
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
NPHP3_N
RNA_helicase
AAA_28
nSTAND3
AAA_18
AAA_7
Mg_chelatase
Vps4_C
AAA_30
AAA_3
DUF815
AAA_24
ABC_tran
AAA_17
AAA_11
Zeta_toxin
TsaE
Sigma54_activat
AAA_19
Parvo_NS1
NB-ARC
PhoH
SLFN-g3_helicase
ATPase
Viral_helicase1
AAA_25
MazE_antitoxin
Zot
Motif
Other DBs
NCBI-ProteinID:
UYY76261
LinkDB
All DBs
Position
complement(2526911..2529196)
Genome browser
AA seq
761 aa
AA seq
DB search
MADDESRKRRLQVANARPEDSGRGLAHIPRSLMAALGITEGDVIEIVGKRTTPARAVLPY
TEDEGLELLRIDGLQRANAGVGSGDFVEVRRVDSKPATRVVFGPAQANLRLRGTGEALKR
TFFTRPLTSGDTIATVGHQRADVPPNVQQFVRAPAYALQEIRLTVLSTVPRGVVHIDENT
EVELRTEYEEAKESRRADVTYDDIGGMAGTIDQLREMVELPLRYPELFQRLGVDPPKGVL
LHGPPGTGKTRLARAVANESDASFHLINGPEIMGSAYGESEQRLRQVFEEAAKNAPSIVF
IDEIDSIAPKRGQVTGEAEKRLVAQLLTLMDGLEARANIVVIAATNRPEAIDEALRRPGR
FDREIVVGVPDDRGRREIMGIHTRGMPLSEDVDLEELARTTYGFVGADLAALTREAAIEA
VRRIMPRLNLEEGTIPPEVLDTLSVTRDDFLEALKRVQPSAMREVMVQAPTVRWEDVGGL
DDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIAT
KSSDLLSKWYGESEQQIARLFARARQVAPCVIFIDELDSLVPARGGAMGEPQVTERVVNT
ILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELVYVGVPDKTGRERILRIQTAK
MPLAPDVDLGAIAEQAQRYTGADLEDVVRRAGLVALRQSLATREVTMAHFEAALKDSRAT
VTPEMESEYEAMQGKLKQQASSIQPIGFIAPGMLEGRGPKG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgacgaatcccgcaaacgccggctccaggtcgccaacgcgcggcccgaggac
agcggccgcgggctcgcccatatcccgcgcagcttgatggcagcgctcggcatcaccgag
ggcgatgtgatcgagattgtcggcaagcgcaccacgcctgcgcgcgccgtccttccctac
accgaagacgaagggctcgagctgctccgcatcgacgggcttcagcgtgccaatgccggc
gtcggctcgggtgatttcgtcgaggtgcgccgcgttgattcgaagcccgcgactcgcgtc
gtattcggccctgcccaggcgaatctgcgcctgcgcggcaccggcgaggcgctcaagcgc
accttcttcacccgcccgctcacgtccggcgacaccatcgccaccgtcggccaccagcgc
gccgatgtgccgccgaacgtccagcagttcgtacgggcacccgcctatgcgctgcaggaa
atccgcctgacggtgctctctaccgtcccgcgcggggtggtccacatcgacgagaacacc
gaggtcgagctccgcaccgaatatgaggaggccaaggagagccgccgtgccgacgtcacc
tatgacgatatcggcggcatggcgggtacgatcgaccagctgcgcgagatggtcgagctt
cccttgcgctacccggagctgttccagcgtctgggcgtcgatccgcccaagggcgtgttg
ctccatggaccgcccggcaccggcaagacgcggcttgcccgcgccgtcgcaaatgaaagc
gacgcgagcttccacctgatcaacggcccggagatcatgggctcggcctatggcgaatcc
gagcagcggctgcggcaggtgttcgaggaagcggcgaagaatgcaccctcgatcgtcttc
atcgacgagatcgactcgatcgcgccgaagcggggccaggtgaccggcgaagcggagaag
cgcctcgtcgcgcagctgctgacgctgatggacgggctggaagcgcgcgccaacatcgtc
gtgatcgccgccaccaatcgtcccgaggcgatcgacgaggcgctgcgccgcccgggccgg
ttcgatcgcgagatcgtggtcggggtaccggacgatcgcgggcgccgcgagatcatgggc
atccacacgcggggcatgccgctgtccgaggatgtcgatctcgaggagcttgcgcgcacc
acctacggcttcgtcggcgccgatctcgccgcgctgacccgcgaagcggcgatcgaggcg
gttcgccggatcatgccgcgactcaacctcgaggaaggcacgatcccgccggaggtgctc
gacacgctgtcggtcacccgcgacgattttctggaggcgctcaagcgcgtccagccctcg
gcaatgcgcgaagtgatggtgcaggcgccaacggtccgctgggaggatgtcggcgggctc
gacgatgcgcagatgcggctcaaggaaggtgtggagctgccgctcaaggatccggacgcg
ttccggcgcctcggcatccgccccgccaagggtttcctgctgtacgggcccccgggcacc
ggcaagacgctgctcgccaaggccgtggcccgcgaggcgcaggcgaatttcatcgccacc
aagtcgagcgacctgctgagcaaatggtatggcgagagcgagcagcagatcgcccggctg
ttcgcccgtgcccgccaggtcgcaccctgcgtgatcttcatcgacgagctcgattcgctg
gtccccgcccggggcggcgcgatgggcgagccgcaggtgacggagcgcgtggtcaacacc
atccttgccgagatggacgggctggaggagcttcagtcggtggtggttatcggcgcgacg
aaccggccgaatcttatcgaccccgcgctgctgcgcccggggcggttcgacgagctcgtt
tatgtcggcgtgcccgacaagaccgggcgcgagcggattctgcgcatccagaccgccaag
atgcccttggcgccggacgtcgatcttggcgcgatcgccgagcaggcccagcgctacacg
ggggccgatctggaagacgttgttcgccgcgccggcctcgtcgcgttgcgccagtcgctg
gccacacgggaagtgacgatggcccatttcgaggcagcgttgaaggattcgcgcgccacc
gtcacgccggagatggaaagcgagtatgaagccatgcaaggcaagctgaagcagcaggcc
tcgtcgatccagccgatcggcttcatcgcgccggggatgctggaaggtcgggggccgaaa
ggctag
DBGET
integrated database retrieval system