KEGG   Sphingomonas sp. R1: OIM94_12100
Entry
OIM94_12100       CDS       T11062                                 
Name
(GenBank) CDC48 family AAA ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
sprr  Sphingomonas sp. R1
Brite
KEGG Orthology (KO) [BR:sprr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    OIM94_12100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sprr03019]
    OIM94_12100
   03009 Ribosome biogenesis [BR:sprr03009]
    OIM94_12100
   04131 Membrane trafficking [BR:sprr04131]
    OIM94_12100
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sprr04147]
    OIM94_12100
Messenger RNA biogenesis [BR:sprr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     OIM94_12100
Ribosome biogenesis [BR:sprr03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    OIM94_12100
Membrane trafficking [BR:sprr04131]
 SNARE
  SNARE associated proteins
   Others
    OIM94_12100
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    OIM94_12100
Exosome [BR:sprr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   OIM94_12100
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N AAA_5 AAA_22 CDC48_2 AAA_33 AAA_2 AAA_14 TIP49 IstB_IS21 NPHP3_N RNA_helicase AAA_28 nSTAND3 AAA_18 AAA_7 Mg_chelatase Vps4_C AAA_30 AAA_3 DUF815 AAA_24 ABC_tran AAA_17 AAA_11 Zeta_toxin TsaE Sigma54_activat AAA_19 Parvo_NS1 NB-ARC PhoH SLFN-g3_helicase ATPase Viral_helicase1 AAA_25 MazE_antitoxin Zot
Other DBs
NCBI-ProteinID: UYY76261
LinkDB
Position
complement(2526911..2529196)
AA seq 761 aa
MADDESRKRRLQVANARPEDSGRGLAHIPRSLMAALGITEGDVIEIVGKRTTPARAVLPY
TEDEGLELLRIDGLQRANAGVGSGDFVEVRRVDSKPATRVVFGPAQANLRLRGTGEALKR
TFFTRPLTSGDTIATVGHQRADVPPNVQQFVRAPAYALQEIRLTVLSTVPRGVVHIDENT
EVELRTEYEEAKESRRADVTYDDIGGMAGTIDQLREMVELPLRYPELFQRLGVDPPKGVL
LHGPPGTGKTRLARAVANESDASFHLINGPEIMGSAYGESEQRLRQVFEEAAKNAPSIVF
IDEIDSIAPKRGQVTGEAEKRLVAQLLTLMDGLEARANIVVIAATNRPEAIDEALRRPGR
FDREIVVGVPDDRGRREIMGIHTRGMPLSEDVDLEELARTTYGFVGADLAALTREAAIEA
VRRIMPRLNLEEGTIPPEVLDTLSVTRDDFLEALKRVQPSAMREVMVQAPTVRWEDVGGL
DDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIAT
KSSDLLSKWYGESEQQIARLFARARQVAPCVIFIDELDSLVPARGGAMGEPQVTERVVNT
ILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELVYVGVPDKTGRERILRIQTAK
MPLAPDVDLGAIAEQAQRYTGADLEDVVRRAGLVALRQSLATREVTMAHFEAALKDSRAT
VTPEMESEYEAMQGKLKQQASSIQPIGFIAPGMLEGRGPKG
NT seq 2286 nt   +upstreamnt  +downstreamnt
atggccgatgacgaatcccgcaaacgccggctccaggtcgccaacgcgcggcccgaggac
agcggccgcgggctcgcccatatcccgcgcagcttgatggcagcgctcggcatcaccgag
ggcgatgtgatcgagattgtcggcaagcgcaccacgcctgcgcgcgccgtccttccctac
accgaagacgaagggctcgagctgctccgcatcgacgggcttcagcgtgccaatgccggc
gtcggctcgggtgatttcgtcgaggtgcgccgcgttgattcgaagcccgcgactcgcgtc
gtattcggccctgcccaggcgaatctgcgcctgcgcggcaccggcgaggcgctcaagcgc
accttcttcacccgcccgctcacgtccggcgacaccatcgccaccgtcggccaccagcgc
gccgatgtgccgccgaacgtccagcagttcgtacgggcacccgcctatgcgctgcaggaa
atccgcctgacggtgctctctaccgtcccgcgcggggtggtccacatcgacgagaacacc
gaggtcgagctccgcaccgaatatgaggaggccaaggagagccgccgtgccgacgtcacc
tatgacgatatcggcggcatggcgggtacgatcgaccagctgcgcgagatggtcgagctt
cccttgcgctacccggagctgttccagcgtctgggcgtcgatccgcccaagggcgtgttg
ctccatggaccgcccggcaccggcaagacgcggcttgcccgcgccgtcgcaaatgaaagc
gacgcgagcttccacctgatcaacggcccggagatcatgggctcggcctatggcgaatcc
gagcagcggctgcggcaggtgttcgaggaagcggcgaagaatgcaccctcgatcgtcttc
atcgacgagatcgactcgatcgcgccgaagcggggccaggtgaccggcgaagcggagaag
cgcctcgtcgcgcagctgctgacgctgatggacgggctggaagcgcgcgccaacatcgtc
gtgatcgccgccaccaatcgtcccgaggcgatcgacgaggcgctgcgccgcccgggccgg
ttcgatcgcgagatcgtggtcggggtaccggacgatcgcgggcgccgcgagatcatgggc
atccacacgcggggcatgccgctgtccgaggatgtcgatctcgaggagcttgcgcgcacc
acctacggcttcgtcggcgccgatctcgccgcgctgacccgcgaagcggcgatcgaggcg
gttcgccggatcatgccgcgactcaacctcgaggaaggcacgatcccgccggaggtgctc
gacacgctgtcggtcacccgcgacgattttctggaggcgctcaagcgcgtccagccctcg
gcaatgcgcgaagtgatggtgcaggcgccaacggtccgctgggaggatgtcggcgggctc
gacgatgcgcagatgcggctcaaggaaggtgtggagctgccgctcaaggatccggacgcg
ttccggcgcctcggcatccgccccgccaagggtttcctgctgtacgggcccccgggcacc
ggcaagacgctgctcgccaaggccgtggcccgcgaggcgcaggcgaatttcatcgccacc
aagtcgagcgacctgctgagcaaatggtatggcgagagcgagcagcagatcgcccggctg
ttcgcccgtgcccgccaggtcgcaccctgcgtgatcttcatcgacgagctcgattcgctg
gtccccgcccggggcggcgcgatgggcgagccgcaggtgacggagcgcgtggtcaacacc
atccttgccgagatggacgggctggaggagcttcagtcggtggtggttatcggcgcgacg
aaccggccgaatcttatcgaccccgcgctgctgcgcccggggcggttcgacgagctcgtt
tatgtcggcgtgcccgacaagaccgggcgcgagcggattctgcgcatccagaccgccaag
atgcccttggcgccggacgtcgatcttggcgcgatcgccgagcaggcccagcgctacacg
ggggccgatctggaagacgttgttcgccgcgccggcctcgtcgcgttgcgccagtcgctg
gccacacgggaagtgacgatggcccatttcgaggcagcgttgaaggattcgcgcgccacc
gtcacgccggagatggaaagcgagtatgaagccatgcaaggcaagctgaagcagcaggcc
tcgtcgatccagccgatcggcttcatcgcgccggggatgctggaaggtcgggggccgaaa
ggctag

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