Sphingomonas sp. R1: OIM94_12580
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Entry
OIM94_12580 CDS
T11062
Symbol
ssb
Name
(GenBank) single-stranded DNA-binding protein
KO
K03111
single-strand DNA-binding protein
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03030
DNA replication
sprr03430
Mismatch repair
sprr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OIM94_12580 (ssb)
03430 Mismatch repair
OIM94_12580 (ssb)
03440 Homologous recombination
OIM94_12580 (ssb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprr03032
]
OIM94_12580 (ssb)
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_12580 (ssb)
03029 Mitochondrial biogenesis [BR:
sprr03029
]
OIM94_12580 (ssb)
DNA replication proteins [BR:
sprr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
OIM94_12580 (ssb)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
OIM94_12580 (ssb)
TLS (translesion DNA synthesis) factors
Other SOS response factors
OIM94_12580 (ssb)
Mitochondrial biogenesis [BR:
sprr03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Other Mitochondrial DNA replication factors
OIM94_12580 (ssb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSB
DUF3016
Motif
Other DBs
NCBI-ProteinID:
UYY76353
LinkDB
All DBs
Position
2628343..2628924
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AA seq
193 aa
AA seq
DB search
MAGSVNKVILVGNLGRDPESRAFQNGGKVVELRIATSESWKDRNSGERKEKTEWHTVKIF
SEGLANVAERYLRKGSKVYLEGQLQTRKWQDQSGADRYSTEIVLQGFNAQMVLLDGPGGG
QGGGMGGGRSSGGGDDWGADDSFGGGGGGFGGGAPAGRGGNNFNSGGQRSGGAASGGGFG
GGFPDDLDDDVPF
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcagcgtcaacaaggtgatcctcgtcggcaatctggggcgcgaccccgagagc
cgggcgttccagaatggcggcaaggtggtcgagctgcgcatcgccacctcggagagctgg
aaggatcgcaacagcggcgagcgcaaggaaaagaccgagtggcacacggtgaagatcttc
tccgaaggtcttgccaatgtcgccgagcgctatctgcgcaagggcagcaaggtctatctc
gaaggccagctgcagacccgcaagtggcaggaccagagcggcgcggatcgctactccacc
gagatcgtgctgcagggcttcaacgcgcagatggtgctgctcgatggtcctggcggcggc
cagggcggcggcatgggcggcggccgtagcagcggcggcggcgacgactggggcgcggac
gattcgttcggcggcggcggcggcggctttggcggcggcgcgcccgcgggtcgcggcggc
aacaatttcaacagcggcggtcagcgcagcggcggtgcggcaagcggcggcggcttcggc
ggcggcttcccggacgatctggacgacgacgtgccgttctga
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integrated database retrieval system
