Sphingomonas sp. R1: OIM94_12805
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Entry
OIM94_12805 CDS
T11062
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OIM94_12805 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_12805 (ung)
Enzymes [BR:
sprr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
OIM94_12805 (ung)
DNA repair and recombination proteins [BR:
sprr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OIM94_12805 (ung)
Prokaryotic type
OIM94_12805 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
UYY76397
LinkDB
All DBs
Position
complement(2672782..2673480)
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AA seq
232 aa
AA seq
DB search
MSTIKLHPSWLAPLEQEFAQPYMAALRDYLRAEKAAGKRIFPAGGDWFRALDLTPLEQVR
VVILGQDPYHGEGQAHGLCFSVKPGVRTPPSLVNIYKEMETDLGIPRAQHGFLEHWAEQG
VLLLNAVLTVEMGRAAAHQGRGWERFTDAVIRLVNARAEPVVFLLWGSHAQKKAAFVDSI
EKGGRHLVLKAPHPSPLSAHSGFFGSRHFSKANAFLESIGQKPIDWALPPLG
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgatcaagctgcacccgagctggctcgccccgctcgaacaggaattcgcccag
ccctatatggcggcgctgcgcgactatctgcgtgcggagaaggcggcgggaaagcgcatc
tttccggcaggtggcgactggtttcgcgcactcgatctgacgccgctggagcaggtgcgc
gtggtgatcctcgggcaggacccctatcatggcgaaggccaggcgcacggcctgtgcttc
tcggtgaagcccggcgtgcggaccccgcccagcctggtcaacatctacaaggagatggag
accgacctcggcatcccccgcgcgcagcacggctttctcgagcattgggcggaacagggc
gtgctgctgctcaatgcggtgctgacggtggagatgggccgcgccgccgcacatcagggg
cgtggctgggagcgcttcaccgatgcggtgatccgcctggtcaacgccagggcggaaccg
gtggtattcctgctctggggtagccatgcccagaaaaaggcggcgttcgtcgactcgatc
gaaaagggcggacggcacctggtgctcaaggccccccacccctcgccgctctcggcacat
tcggggttcttcgggagccggcatttcagcaaggcgaacgcgtttctggagagcatcggc
cagaagccgatcgactgggcattgccgccgctggggtga
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