Sphingomonas sp. R1: OIM94_13050
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Entry
OIM94_13050 CDS
T11062
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sprr Sphingomonas sp. R1
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprr03019
]
OIM94_13050 (hrpB)
Enzymes [BR:
sprr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OIM94_13050 (hrpB)
Messenger RNA biogenesis [BR:
sprr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OIM94_13050 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_30
AAA_19
Cas3-like_C_2
ResIII
CON_HrpB
Flavi_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UYY76443
LinkDB
All DBs
Position
2730118..2732697
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AA seq
859 aa
AA seq
DB search
MTPSLPIHAVLPALLDALREGSNAVLVAPPGAGKTTAVAWALLAEAWCDGEILLLSPRRL
AARAAAERMAALAGESVGKTFGYATRMDSKRSAATRVTVVTEGIFVNRIQSDPELAGVSA
VLFDEVHERSLDSDFGLALALDAQGALRPDLRLVAMSATLDGSRFSGLMGAAPVVESEGR
SFPLTLRHLGRAAEARIEDGVAGAVRQALREEQGGILAFLPGVAEIERTAERLGDVGGAV
LHRLHGSLEPAAQRAAIAPDPEGRRKIVLATSIAETSLTLDGIRVVVDSGLARRPRYDRA
AGMTRLVTERASQAAVTQRAGRAARQGPGTAYRLWEEAATAGLPRFDPPEILEADLSALM
LDCALWGVTDPRQLAWLDPPPEAAIAEARARLGALDAIDRDGRPTEHGKAIARLPLPPRL
GHMLVRASERGMARTAAEVAVLLGERGLGGNDADLELRLRRWKGERGQRAENARRLAERW
SKLVPPPAAIAPLPLAGGAGGGADVEAPSPAVKQANRSSPPPTPPASGRGALVSSEGENV
ALCVALAFPDRVAKRRDGSGETWASVGGRGFKLDPTSPLARADWLAVAETQGMAAGARIL
SAAPLDAATVESLFADRIETRRTVTFDPATGRIEALRERRLGAVRLSGGSDSGATPAEIE
SALLEGVRANGLHLLPWSDTAKALRTRGAYAGIAALTDEALLATLDDWLPAALEGRRRLD
AVPPESLTQALQNLLGWDGQKMLDRLAPARFETPAGSSHAIDYAAEAGPTVEVRVQALFG
LAEHPMIGGDVPLVLSLTSPAGRPIQTTRDLPGFWKGSWTAVAKEMRGRYPRHPWPEDPT
AASATLRTKNADARARGAR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgactccctccctgccgatccacgctgttttgccggcgctgctcgatgcgttgcgggag
ggcagcaacgcggtgctggtcgcgccgccgggcgcgggcaagacgacggcggtcgcctgg
gcgctgctcgccgaggcatggtgtgacggggagatcctgctgctctccccccggcgcctc
gcggcgcgggcggcggcggagcggatggcggcactggcgggcgaaagcgtcggcaagacc
ttcggctacgccacgcggatggacagcaagcgttcggcggcgacgcgggtgacggtcgtc
accgagggcattttcgtcaaccgcatccagtccgatcccgagctcgcaggcgtgtccgcc
gtgctgttcgacgaagtgcatgagcgcagcctcgacagcgatttcggtctcgcgctggcg
ctcgatgcgcagggcgcactgcggccggatctgcggctggtggcgatgtcggcgacgctc
gacggcagccgcttttccgggctgatgggcgcggcgcccgttgtggagagcgaaggccgc
agctttccactgacgctgcgccatctcggtcgcgccgccgaggcgcggatcgaggacggc
gtggcgggggcggtgcggcaggcgttgcgggaagagcagggcggcatcctcgccttcctg
cccggcgtcgcggagatcgaacggaccgccgagcggctgggcgacgtcggcggcgcggtg
ctccaccggttgcacggtagccttgagcctgccgcccagcgcgcggcgatcgcacccgat
ccggaggggcggcgcaagatcgtgctggcgacctcgatcgccgagacctcactgacgctg
gacggcatccgggtggtggtggattcggggctggcgcgccgcccgcgctacgatcgcgcg
gcggggatgacgcggcttgtcaccgagcgcgccagccaggcggcggtgacccagcgggcg
gggcgcgcggcacggcaggggccggggactgcttatcggctgtgggaagaagccgcgacg
gcggggctgccgcgctttgatccgccggagatcctggaagccgacctgtctgcgctgatg
ctcgattgcgcgctgtggggtgtcaccgatccccgccaactcgcctggctcgatccgccg
cccgaggctgccatcgccgaggcgcgggcgcggctgggagcgctggacgcaatcgaccgc
gacggccgcccgaccgagcacggcaaggcgatcgcgcgcctgccgctgccgcctcgtttg
ggccatatgctggtgcgcgcaagcgagcgcgggatggcgcggacggccgccgaggtggca
gtgctgctaggcgagcgcgggctgggcggcaatgacgccgatctggagctgcgtctgcgc
cggtggaagggggagcgtggccagcgcgcggagaatgcacggcggctggcagagcgctgg
agcaaactcgttccccctcccgcagcgatcgctcccctcccgcttgcgggaggggctggg
ggaggggctgatgtggaggctccatccccagcggtgaagcaggcgaaccgttcatcccct
cccccgacccctcccgcaagcgggaggggagcgctggtttcgagcgagggagaaaacgtc
gccctctgcgtcgcgctcgctttccctgatcgcgtggccaagcgtcgcgacggctcgggc
gagacctgggcctcggtcggcgggcgcgggttcaagctggatccgacctcgccgctcgcc
cgcgccgactggctggcggtggcggagacgcagggcatggccgctggcgcgcggatcctc
tccgccgcgccgctcgacgccgcgacggtcgaatcgctgttcgccgatcgcatcgagacc
cgccgcaccgtgaccttcgatcccgccaccggccgcatcgaagcgctgcgcgaacggcgg
cttggcgccgtccgcctctccggcggcagcgactcgggtgcgacgcctgcggaaatcgaa
tcggcattgctcgaaggcgtccgcgccaacggcctgcatctgcttccctggtccgacacc
gcgaaggcgctccgcacccggggtgcctatgccggaatcgcggcgctgaccgacgaagcc
ctgctcgcgacgctcgacgactggctgcccgcggcgctcgaaggcaggcgacggctcgat
gcagtgccccccgaatcgctcacccaggcgctgcagaacctgctcggctgggacgggcag
aagatgctcgaccgcctcgcccccgcgcggttcgagacgcccgctggatcctcccatgcc
atcgactatgctgccgaagccggtcccacggtagaagtccgtgtgcaggcgctgttcggc
cttgccgaacatcccatgatcggcggcgatgtgccgctggtgctcagcctcacctcgccg
gcggggcgtccgatccagaccacgcgggacctgccgggcttctggaaggggagctggacg
gcggtggccaaggagatgcgtggccgctatccccgccatccctggcccgaggacccgacg
gcggcctccgcaacgctacggacgaaaaacgctgatgcaagggcgcgcggggcgcgctaa
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