Sphingomonas sp. R1: OIM94_13740
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Entry
OIM94_13740 CDS
T11062
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIM94_13740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sprr03019
]
OIM94_13740
Enzymes [BR:
sprr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OIM94_13740
Messenger RNA biogenesis [BR:
sprr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OIM94_13740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PTP-NADK
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UYY76569
LinkDB
All DBs
Position
2870761..2872263
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AA seq
500 aa
AA seq
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MLFKDLGLSETVLAALSAKGYSEATPIQAQSIPALLEGRDLLGIAQTGTGKTAAFMLPSI
DRLVASGKRAQPRGCRMLVLAPTRELAAQIADNAKHYASGTGLRIATVFGGTSVHKNKTD
LARGVDILVATPGRLVDLLDQCYMILLGIEILVLDEADQMLDLGFIHALRRIVKELPAKR
QSLFFSATMPKTIRELASQFIHNPVEVKVTPVATTAERVEQFVTYVNQTEKQALLTMQLR
NPDIDRALIFTRTKHGADRVVRLLAGNGIAANAIHGNKSQPQRERALGEFRSGKVKLMVA
TDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISYCADDERPYLKDIE
RLTRQKLTVQPLPENFMAEADKIKSTRSPMPASRDEQNGRNGRAMQHASGRRGDGQPARG
GRGGPRSDAPRGGEQRRAEGPRGEQPRRQEGAGHAGAGAGAGRGPGAPKRKFNARPAGSG
QGRPGGNRGQGQGGGAGRSR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcaaagacctcggcctttccgagaccgtcctcgctgcgctttcggcgaagggc
tatagcgaagctacgccgatccaggcgcagtcgatccccgcgctgctcgaagggcgcgac
ctgctcggcatcgcccagaccggcaccggcaagaccgccgcgttcatgctcccctcgatc
gatcgcctcgtcgccagcggcaagcgtgcccagccgcgcggctgccgcatgctcgtcctc
gcgccgacccgcgagcttgccgcgcagatcgccgacaacgccaagcactacgccagcggc
accggcctgcgcatcgccaccgtgttcggcggcacttcggtccacaagaacaagaccgat
ctggcgcgcggcgtcgacatcctcgtcgccacgccgggccgcctcgtcgacctgctcgac
cagtgctacatgatcctgctcgggatcgagatcctggtgctcgacgaagccgaccagatg
ctcgacctcggcttcatccacgcgctgcgccgcatcgtgaaggaactgccggccaagcgc
cagtcgctgttcttctcggcgaccatgcccaagacgatccgcgagctggccagccagttc
atccacaatccggtggaagtgaaggtgaccccggtcgccaccaccgcggagcgcgtcgag
cagttcgtcacctatgtgaaccagaccgagaagcaggcgctgctgaccatgcagctgcgc
aacccggacatcgaccgcgcgctgatcttcacccgcaccaagcatggtgccgaccgcgtc
gtgcggctgctcgccggcaacggcatcgccgccaacgcgatccacggcaacaagagccag
ccgcagcgcgagcgggcgctgggcgagttccgctcgggcaaggtcaagctgatggtggcg
accgacatcgccgcgcgcggcatcgacgtgtcgggggtgagccatgtgttcaacttcgag
ctgccgaacgtgcccgagcaatatgtccaccgcatcggccgcaccgcgcgcgccggcgcc
gacggcatcgcgatcagctactgcgccgatgacgagcgtccgtatctgaaggacatcgag
cggctgacccgccagaagctcaccgtgcagccgctgccggagaacttcatggccgaggcc
gacaagatcaagtcgacccgctcgccgatgccggcgagccgcgacgagcaaaacggccgc
aacggccgcgcgatgcagcatgcctcgggccgtcgtggcgacggccagccggcgcgtggc
ggtcgcggcgggccgcgcagcgatgcgccgcgcggtggcgagcagcgccgggccgaaggt
ccgcgcggggagcagccgcgtcgccaggaaggtgccggtcacgccggtgctggcgccggt
gccggtcgcggtccgggcgcgccgaagcgcaagttcaacgcacgcccggcgggcagcggc
cagggtcgtcccggcggcaatcgcggccagggccaaggcggcggcgcaggtcgctcgcgc
tga
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